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Example 1 with Location

use of de.symeda.sormas.backend.location.Location in project SORMAS-Project by hzi-braunschweig.

the class PersonFacadeEjb method getIndexList.

@Override
@SuppressWarnings({ "rawtypes", "unchecked" })
public List<PersonIndexDto> getIndexList(PersonCriteria criteria, Integer first, Integer max, List<SortProperty> sortProperties) {
    long startTime = DateHelper.startTime();
    final CriteriaBuilder cb = em.getCriteriaBuilder();
    final CriteriaQuery<PersonIndexDto> cq = cb.createQuery(PersonIndexDto.class);
    final Root<Person> person = cq.from(Person.class);
    final PersonQueryContext personQueryContext = new PersonQueryContext(cb, cq, person);
    final PersonJoins personJoins = (PersonJoins) personQueryContext.getJoins();
    personJoins.configure(criteria);
    final Join<Person, Location> location = personJoins.getAddress();
    final Join<Location, District> district = personJoins.getAddressJoins().getDistrict();
    final Subquery<String> phoneSubQuery = cq.subquery(String.class);
    final Root<PersonContactDetail> phoneRoot = phoneSubQuery.from(PersonContactDetail.class);
    phoneSubQuery.where(cb.and(cb.equal(phoneRoot.get(PersonContactDetail.PERSON), person), cb.isTrue(phoneRoot.get(PersonContactDetail.PRIMARY_CONTACT)), cb.equal(phoneRoot.get(PersonContactDetail.PERSON_CONTACT_DETAIL_TYPE), PersonContactDetailType.PHONE)));
    phoneSubQuery.select(phoneRoot.get(PersonContactDetail.CONTACT_INFORMATION));
    final Subquery<String> emailSubQuery = cq.subquery(String.class);
    final Root<PersonContactDetail> emailRoot = emailSubQuery.from(PersonContactDetail.class);
    emailSubQuery.where(cb.and(cb.equal(emailRoot.get(PersonContactDetail.PERSON), person), cb.isTrue(emailRoot.get(PersonContactDetail.PRIMARY_CONTACT)), cb.equal(emailRoot.get(PersonContactDetail.PERSON_CONTACT_DETAIL_TYPE), PersonContactDetailType.EMAIL)));
    emailSubQuery.select(emailRoot.get(PersonContactDetail.CONTACT_INFORMATION));
    // make sure to check the sorting by the multi-select order if you extend the selections here
    cq.multiselect(person.get(Person.UUID), person.get(Person.FIRST_NAME), person.get(Person.LAST_NAME), person.get(Person.APPROXIMATE_AGE), person.get(Person.APPROXIMATE_AGE_TYPE), person.get(Person.BIRTHDATE_DD), person.get(Person.BIRTHDATE_MM), person.get(Person.BIRTHDATE_YYYY), person.get(Person.SEX), district.get(District.NAME), location.get(Location.STREET), location.get(Location.HOUSE_NUMBER), location.get(Location.POSTAL_CODE), location.get(Location.CITY), phoneSubQuery.alias(PersonIndexDto.PHONE), emailSubQuery.alias(PersonIndexDto.EMAIL_ADDRESS), person.get(Person.CHANGE_DATE), JurisdictionHelper.booleanSelector(cb, personService.inJurisdictionOrOwned(personQueryContext)));
    Predicate filter = createIndexListFilter(criteria, personQueryContext);
    if (filter != null) {
        cq.where(filter);
    }
    cq.distinct(true);
    if (sortProperties != null && sortProperties.size() > 0) {
        List<Order> order = new ArrayList<Order>(sortProperties.size());
        for (SortProperty sortProperty : sortProperties) {
            Expression<?> expression;
            switch(sortProperty.propertyName) {
                case PersonIndexDto.UUID:
                case PersonIndexDto.FIRST_NAME:
                case PersonIndexDto.LAST_NAME:
                case PersonIndexDto.SEX:
                    expression = person.get(sortProperty.propertyName);
                    break;
                case PersonIndexDto.PHONE:
                    // order in the multiselect - Postgres limitation - needed to make sure it uses the same expression for ordering
                    expression = cb.literal(15);
                    break;
                case PersonIndexDto.EMAIL_ADDRESS:
                    // order in the multiselect - Postgres limitation - needed to make sure it uses the same expression for ordering
                    expression = cb.literal(16);
                    break;
                case PersonIndexDto.AGE_AND_BIRTH_DATE:
                    expression = person.get(Person.APPROXIMATE_AGE);
                    break;
                case PersonIndexDto.DISTRICT:
                    expression = district.get(District.NAME);
                    break;
                case PersonIndexDto.STREET:
                case PersonIndexDto.HOUSE_NUMBER:
                case PersonIndexDto.POSTAL_CODE:
                case PersonIndexDto.CITY:
                    expression = location.get(sortProperty.propertyName);
                    break;
                default:
                    throw new IllegalArgumentException(sortProperty.propertyName);
            }
            order.add(sortProperty.ascending ? cb.asc(expression) : cb.desc(expression));
        }
        cq.orderBy(order);
    } else {
        cq.orderBy(cb.desc(person.get(Person.CHANGE_DATE)));
    }
    List<PersonIndexDto> persons = QueryHelper.getResultList(em, cq, first, max);
    Pseudonymizer pseudonymizer = Pseudonymizer.getDefault(userService::hasRight, I18nProperties.getCaption(Captions.inaccessibleValue));
    pseudonymizer.pseudonymizeDtoCollection(PersonIndexDto.class, persons, p -> p.getInJurisdiction(), (p, isInJurisdiction) -> pseudonymizer.pseudonymizeDto(AgeAndBirthDateDto.class, p.getAgeAndBirthDate(), isInJurisdiction, null));
    logger.debug("getIndexList() finished. association={}, count={}, {}ms", Optional.ofNullable(criteria).orElse(new PersonCriteria()).getPersonAssociation().name(), persons.size(), DateHelper.durationMillies(startTime));
    return persons;
}
Also used : AgeAndBirthDateDto(de.symeda.sormas.api.caze.AgeAndBirthDateDto) Pseudonymizer(de.symeda.sormas.backend.util.Pseudonymizer) ArrayList(java.util.ArrayList) Predicate(javax.persistence.criteria.Predicate) SortProperty(de.symeda.sormas.api.utils.SortProperty) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) Order(javax.persistence.criteria.Order) PersonIndexDto(de.symeda.sormas.api.person.PersonIndexDto) PersonCriteria(de.symeda.sormas.api.person.PersonCriteria) District(de.symeda.sormas.backend.infrastructure.district.District) Location(de.symeda.sormas.backend.location.Location)

Example 2 with Location

use of de.symeda.sormas.backend.location.Location in project SORMAS-Project by hzi-braunschweig.

the class PersonFacadeEjb method toDto.

public static PersonDto toDto(Person source) {
    if (source == null) {
        return null;
    }
    PersonDto target = new PersonDto();
    DtoHelper.fillDto(target, source);
    target.setFirstName(source.getFirstName());
    target.setLastName(source.getLastName());
    target.setSalutation(source.getSalutation());
    target.setOtherSalutation(source.getOtherSalutation());
    target.setSex(source.getSex());
    target.setPresentCondition(source.getPresentCondition());
    target.setBirthdateDD(source.getBirthdateDD());
    target.setBirthdateMM(source.getBirthdateMM());
    target.setBirthdateYYYY(source.getBirthdateYYYY());
    if (source.getBirthdateYYYY() != null) {
        // calculate the approximate age based on the birth date
        // still not sure whether this is a good solution
        Pair<Integer, ApproximateAgeType> pair = ApproximateAgeHelper.getApproximateAge(source.getBirthdateYYYY(), source.getBirthdateMM(), source.getBirthdateDD(), source.getDeathDate());
        target.setApproximateAge(pair.getElement0());
        target.setApproximateAgeType(pair.getElement1());
        target.setApproximateAgeReferenceDate(source.getDeathDate() != null ? source.getDeathDate() : new Date());
    } else {
        target.setApproximateAge(source.getApproximateAge());
        target.setApproximateAgeType(source.getApproximateAgeType());
        target.setApproximateAgeReferenceDate(source.getApproximateAgeReferenceDate());
    }
    target.setCauseOfDeath(source.getCauseOfDeath());
    target.setCauseOfDeathDetails(source.getCauseOfDeathDetails());
    target.setCauseOfDeathDisease(source.getCauseOfDeathDisease());
    target.setDeathDate(source.getDeathDate());
    target.setDeathPlaceType(source.getDeathPlaceType());
    target.setDeathPlaceDescription(source.getDeathPlaceDescription());
    target.setBurialDate(source.getBurialDate());
    target.setBurialPlaceDescription(source.getBurialPlaceDescription());
    target.setBurialConductor(source.getBurialConductor());
    target.setBirthName(source.getBirthName());
    target.setNickname(source.getNickname());
    target.setMothersMaidenName(source.getMothersMaidenName());
    target.setAddress(LocationFacadeEjb.toDto(source.getAddress()));
    List<LocationDto> locations = new ArrayList<>();
    for (Location location : source.getAddresses()) {
        LocationDto locationDto = LocationFacadeEjb.toDto(location);
        locations.add(locationDto);
    }
    target.setAddresses(locations);
    if (!CollectionUtils.isEmpty(source.getPersonContactDetails())) {
        target.setPersonContactDetails(source.getPersonContactDetails().stream().map(entity -> {
            final PersonContactDetailDto personContactDetailDto = PersonContactDetailDto.build(source.toReference(), entity.isPrimaryContact(), entity.getPersonContactDetailType(), entity.getPhoneNumberType(), entity.getDetails(), entity.getContactInformation(), entity.getAdditionalInformation(), entity.isThirdParty(), entity.getThirdPartyRole(), entity.getThirdPartyName());
            DtoHelper.fillDto(personContactDetailDto, entity);
            return personContactDetailDto;
        }).collect(Collectors.toList()));
    }
    target.setEducationType(source.getEducationType());
    target.setEducationDetails(source.getEducationDetails());
    target.setOccupationType(source.getOccupationType());
    target.setOccupationDetails(source.getOccupationDetails());
    target.setArmedForcesRelationType(source.getArmedForcesRelationType());
    target.setMothersName(source.getMothersName());
    target.setFathersName(source.getFathersName());
    target.setNamesOfGuardians(source.getNamesOfGuardians());
    target.setPlaceOfBirthRegion(RegionFacadeEjb.toReferenceDto(source.getPlaceOfBirthRegion()));
    target.setPlaceOfBirthDistrict(DistrictFacadeEjb.toReferenceDto(source.getPlaceOfBirthDistrict()));
    target.setPlaceOfBirthCommunity(CommunityFacadeEjb.toReferenceDto(source.getPlaceOfBirthCommunity()));
    target.setPlaceOfBirthFacility(FacilityFacadeEjb.toReferenceDto(source.getPlaceOfBirthFacility()));
    target.setPlaceOfBirthFacilityDetails(source.getPlaceOfBirthFacilityDetails());
    target.setGestationAgeAtBirth(source.getGestationAgeAtBirth());
    target.setBirthWeight(source.getBirthWeight());
    target.setPassportNumber(source.getPassportNumber());
    target.setNationalHealthId(source.getNationalHealthId());
    target.setPlaceOfBirthFacilityType(source.getPlaceOfBirthFacilityType());
    target.setSymptomJournalStatus(source.getSymptomJournalStatus());
    target.setHasCovidApp(source.isHasCovidApp());
    target.setCovidCodeDelivered(source.isCovidCodeDelivered());
    target.setExternalId(source.getExternalId());
    target.setExternalToken(source.getExternalToken());
    target.setInternalToken(source.getInternalToken());
    target.setBirthCountry(CountryFacadeEjb.toReferenceDto(source.getBirthCountry()));
    target.setCitizenship(CountryFacadeEjb.toReferenceDto(source.getCitizenship()));
    target.setAdditionalDetails(source.getAdditionalDetails());
    return target;
}
Also used : PersonContactDetailDto(de.symeda.sormas.api.person.PersonContactDetailDto) ApproximateAgeType(de.symeda.sormas.api.person.ApproximateAgeType) PersonDto(de.symeda.sormas.api.person.PersonDto) SimilarPersonDto(de.symeda.sormas.api.person.SimilarPersonDto) JournalPersonDto(de.symeda.sormas.api.person.JournalPersonDto) ArrayList(java.util.ArrayList) Date(java.util.Date) LocationDto(de.symeda.sormas.api.location.LocationDto) Location(de.symeda.sormas.backend.location.Location)

Example 3 with Location

use of de.symeda.sormas.backend.location.Location in project SORMAS-Project by hzi-braunschweig.

the class PersonService method getAddressByPersonId.

public Location getAddressByPersonId(long personId) {
    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<Location> cq = cb.createQuery(Location.class);
    Root<Person> root = cq.from(getElementClass());
    cq.where(cb.equal(root.get(Person.ID), personId));
    cq.select(root.get(Person.ADDRESS));
    return em.createQuery(cq).getSingleResult();
}
Also used : CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) Location(de.symeda.sormas.backend.location.Location)

Example 4 with Location

use of de.symeda.sormas.backend.location.Location in project SORMAS-Project by hzi-braunschweig.

the class PersonService method getAllAfter.

@Override
public // todo refactor this to use the create user filter form persons
List<Person> getAllAfter(Date date, Integer batchSize, String lastSynchronizedUuid) {
    User user = getCurrentUser();
    CriteriaBuilder cb = em.getCriteriaBuilder();
    // persons by LGA
    CriteriaQuery<Person> personsQuery = cb.createQuery(Person.class);
    Root<Person> personsRoot = personsQuery.from(Person.class);
    Join<Person, Location> address = personsRoot.join(Person.ADDRESS);
    Predicate lgaFilter = cb.equal(address.get(Location.DISTRICT), user.getDistrict());
    // date range
    if (date != null) {
        Predicate dateFilter = createChangeDateFilter(cb, personsRoot, DateHelper.toTimestampUpper(date), lastSynchronizedUuid);
        lgaFilter = cb.and(lgaFilter, dateFilter);
    }
    personsQuery.where(lgaFilter);
    List<Person> lgaResultList = getBatchedQueryResults(cb, personsQuery, personsRoot, batchSize);
    // persons by case
    CriteriaQuery<Person> casePersonsQuery = cb.createQuery(Person.class);
    Root<Case> casePersonsRoot = casePersonsQuery.from(Case.class);
    Join<Person, Person> casePersonsSelect = casePersonsRoot.join(Case.PERSON);
    casePersonsSelect.fetch(Person.ADDRESS);
    casePersonsQuery.select(casePersonsSelect);
    Predicate casePersonsFilter = caseService.createUserFilter(cb, casePersonsQuery, casePersonsRoot);
    // date range
    if (date != null) {
        Predicate dateFilter = createChangeDateFilter(cb, casePersonsSelect, DateHelper.toTimestampUpper(date), lastSynchronizedUuid);
        if (batchSize == null) {
            // include case change dates: When a case is relocated it may become available to another user and this will have to include the person as-well
            Predicate caseDateFilter = caseService.createChangeDateFilter(cb, casePersonsRoot, DateHelper.toTimestampUpper(date));
            dateFilter = cb.or(dateFilter, caseDateFilter);
        }
        if (casePersonsFilter != null) {
            casePersonsFilter = cb.and(casePersonsFilter, dateFilter);
        } else {
            casePersonsFilter = dateFilter;
        }
    }
    if (casePersonsFilter != null) {
        casePersonsQuery.where(casePersonsFilter);
    }
    casePersonsQuery.distinct(true);
    List<Person> casePersonsResultList = getBatchedQueryResults(cb, casePersonsQuery, casePersonsSelect, batchSize);
    // persons by contact
    CriteriaQuery<Person> contactPersonsQuery = cb.createQuery(Person.class);
    Root<Contact> contactPersonsRoot = contactPersonsQuery.from(Contact.class);
    Join<Person, Person> contactPersonsSelect = contactPersonsRoot.join(Contact.PERSON);
    contactPersonsSelect.fetch(Person.ADDRESS);
    contactPersonsQuery.select(contactPersonsSelect);
    Predicate contactPersonsFilter = contactService.createUserFilter(cb, contactPersonsQuery, contactPersonsRoot);
    // date range
    if (date != null) {
        Predicate dateFilter = createChangeDateFilter(cb, contactPersonsSelect, DateHelper.toTimestampUpper(date), lastSynchronizedUuid);
        if (batchSize == null) {
            Predicate contactDateFilter = contactService.createChangeDateFilter(cb, contactPersonsRoot, date);
            dateFilter = cb.or(dateFilter, contactDateFilter);
        }
        contactPersonsFilter = and(cb, contactPersonsFilter, dateFilter);
    }
    if (contactPersonsFilter != null) {
        contactPersonsQuery.where(contactPersonsFilter);
    }
    contactPersonsQuery.distinct(true);
    List<Person> contactPersonsResultList = getBatchedQueryResults(cb, contactPersonsQuery, contactPersonsSelect, batchSize);
    // persons by event participant
    CriteriaQuery<Person> eventPersonsQuery = cb.createQuery(Person.class);
    Root<EventParticipant> eventPersonsRoot = eventPersonsQuery.from(EventParticipant.class);
    Join<Person, Person> eventPersonsSelect = eventPersonsRoot.join(EventParticipant.PERSON);
    eventPersonsSelect.fetch(Person.ADDRESS);
    eventPersonsQuery.select(eventPersonsSelect);
    Predicate eventPersonsFilter = eventParticipantService.createUserFilter(cb, eventPersonsQuery, eventPersonsRoot);
    // date range
    if (date != null) {
        Predicate dateFilter = createChangeDateFilter(cb, eventPersonsSelect, DateHelper.toTimestampUpper(date), lastSynchronizedUuid);
        if (batchSize == null) {
            Predicate eventParticipantDateFilter = eventParticipantService.createChangeDateFilter(cb, eventPersonsRoot, DateHelper.toTimestampUpper(date));
            dateFilter = cb.or(dateFilter, eventParticipantDateFilter);
        }
        eventPersonsFilter = and(cb, eventPersonsFilter, dateFilter);
    }
    if (eventPersonsFilter != null) {
        eventPersonsQuery.where(eventPersonsFilter);
    }
    eventPersonsQuery.distinct(true);
    List<Person> eventPersonsResultList = getBatchedQueryResults(cb, eventPersonsQuery, eventPersonsSelect, batchSize);
    // persons by immunization
    List<Person> immunizationPersonsResultList = new ArrayList<>();
    if (!featureConfigurationFacade.isPropertyValueTrue(FeatureType.IMMUNIZATION_MANAGEMENT, FeatureTypeProperty.REDUCED)) {
        CriteriaQuery<Person> immunizationPersonsQuery = cb.createQuery(Person.class);
        Root<Immunization> immunizationPersonsRoot = immunizationPersonsQuery.from(Immunization.class);
        Join<Immunization, Person> immunizationPersonsSelect = immunizationPersonsRoot.join(Immunization.PERSON);
        immunizationPersonsSelect.fetch(Person.ADDRESS);
        immunizationPersonsQuery.select(immunizationPersonsSelect);
        Predicate immunizationPersonsFilter = immunizationService.createUserFilter(cb, immunizationPersonsQuery, immunizationPersonsRoot);
        // date range
        if (date != null) {
            Predicate dateFilter = createChangeDateFilter(cb, immunizationPersonsSelect, DateHelper.toTimestampUpper(date), lastSynchronizedUuid);
            if (batchSize == null) {
                Predicate immunizationDateFilter = immunizationService.createChangeDateFilter(cb, immunizationPersonsRoot, DateHelper.toTimestampUpper(date));
                dateFilter = cb.or(dateFilter, immunizationDateFilter);
            }
            immunizationPersonsFilter = and(cb, immunizationPersonsFilter, dateFilter);
        }
        if (immunizationPersonsFilter != null) {
            immunizationPersonsQuery.where(immunizationPersonsFilter);
        }
        immunizationPersonsQuery.distinct(true);
        immunizationPersonsResultList = getBatchedQueryResults(cb, immunizationPersonsQuery, immunizationPersonsSelect, batchSize);
    }
    List<Person> travelEntryPersonsResultList = new ArrayList<>();
    // if a batch size is given, this is a sync from the mobile app where travel entries are not relevant for now
    if (batchSize == null) {
        // persons by travel entries
        CriteriaQuery<Person> tepQuery = cb.createQuery(Person.class);
        Root<TravelEntry> tepRoot = tepQuery.from(TravelEntry.class);
        Join<TravelEntry, Person> tepSelect = tepRoot.join(TravelEntry.PERSON);
        tepSelect.fetch(Person.ADDRESS);
        tepQuery.select(tepSelect);
        Predicate tepFilter = travelEntryService.createUserFilter(cb, tepQuery, tepRoot);
        // date range
        if (date != null) {
            Predicate dateFilter = createChangeDateFilter(cb, tepSelect, DateHelper.toTimestampUpper(date));
            Predicate travelEntryDateFilter = travelEntryService.createChangeDateFilter(cb, tepRoot, DateHelper.toTimestampUpper(date));
            tepFilter = and(cb, tepFilter, cb.or(dateFilter, travelEntryDateFilter));
        }
        if (tepFilter != null) {
            tepQuery.where(tepFilter);
        }
        tepQuery.distinct(true);
        travelEntryPersonsResultList = em.createQuery(tepQuery).getResultList();
    }
    return Stream.of(lgaResultList, casePersonsResultList, contactPersonsResultList, eventPersonsResultList, immunizationPersonsResultList, travelEntryPersonsResultList).flatMap(List<Person>::stream).distinct().sorted(new ChangeDateUuidComparator<>()).limit(batchSize == null ? Long.MAX_VALUE : batchSize).collect(Collectors.toList());
}
Also used : TravelEntry(de.symeda.sormas.backend.travelentry.TravelEntry) User(de.symeda.sormas.backend.user.User) ArrayList(java.util.ArrayList) Predicate(javax.persistence.criteria.Predicate) Case(de.symeda.sormas.backend.caze.Case) List(java.util.List) ArrayList(java.util.ArrayList) LinkedList(java.util.LinkedList) CriteriaBuilder(javax.persistence.criteria.CriteriaBuilder) Immunization(de.symeda.sormas.backend.immunization.entity.Immunization) Contact(de.symeda.sormas.backend.contact.Contact) EventParticipant(de.symeda.sormas.backend.event.EventParticipant) Location(de.symeda.sormas.backend.location.Location)

Example 5 with Location

use of de.symeda.sormas.backend.location.Location in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjb method getExportList.

@Override
@TransactionAttribute(TransactionAttributeType.REQUIRES_NEW)
public List<CaseExportDto> getExportList(CaseCriteria caseCriteria, Collection<String> selectedRows, CaseExportType exportType, int first, int max, ExportConfigurationDto exportConfiguration, Language userLanguage) {
    Boolean previousCaseManagementDataCriteria = caseCriteria.getMustHaveCaseManagementData();
    if (CaseExportType.CASE_MANAGEMENT == exportType) {
        caseCriteria.setMustHaveCaseManagementData(Boolean.TRUE);
    }
    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<CaseExportDto> cq = cb.createQuery(CaseExportDto.class);
    Root<Case> caseRoot = cq.from(Case.class);
    final CaseQueryContext caseQueryContext = new CaseQueryContext(cb, cq, caseRoot);
    final CaseJoins<Case> joins = (CaseJoins<Case>) caseQueryContext.getJoins();
    // Events count subquery
    Subquery<Long> eventCountSq = cq.subquery(Long.class);
    Root<EventParticipant> eventCountRoot = eventCountSq.from(EventParticipant.class);
    Join<EventParticipant, Event> event = eventCountRoot.join(EventParticipant.EVENT, JoinType.INNER);
    Join<EventParticipant, Case> resultingCase = eventCountRoot.join(EventParticipant.RESULTING_CASE, JoinType.INNER);
    eventCountSq.where(cb.and(cb.equal(resultingCase.get(Case.ID), caseRoot.get(Case.ID)), cb.isFalse(event.get(Event.DELETED)), cb.isFalse(event.get(Event.ARCHIVED)), cb.isFalse(eventCountRoot.get(EventParticipant.DELETED))));
    eventCountSq.select(cb.countDistinct(event.get(Event.ID)));
    // @formatter:off
    cq.multiselect(caseRoot.get(Case.ID), joins.getPerson().get(Person.ID), joins.getPersonAddress().get(Location.ID), joins.getEpiData().get(EpiData.ID), joins.getSymptoms().get(Symptoms.ID), joins.getHospitalization().get(Hospitalization.ID), joins.getHealthConditions().get(HealthConditions.ID), caseRoot.get(Case.UUID), caseRoot.get(Case.EPID_NUMBER), caseRoot.get(Case.DISEASE), caseRoot.get(Case.DISEASE_VARIANT), caseRoot.get(Case.DISEASE_DETAILS), caseRoot.get(Case.DISEASE_VARIANT_DETAILS), joins.getPerson().get(Person.UUID), joins.getPerson().get(Person.FIRST_NAME), joins.getPerson().get(Person.LAST_NAME), joins.getPerson().get(Person.SALUTATION), joins.getPerson().get(Person.OTHER_SALUTATION), joins.getPerson().get(Person.SEX), caseRoot.get(Case.PREGNANT), joins.getPerson().get(Person.APPROXIMATE_AGE), joins.getPerson().get(Person.APPROXIMATE_AGE_TYPE), joins.getPerson().get(Person.BIRTHDATE_DD), joins.getPerson().get(Person.BIRTHDATE_MM), joins.getPerson().get(Person.BIRTHDATE_YYYY), caseRoot.get(Case.REPORT_DATE), joins.getRegion().get(Region.NAME), joins.getDistrict().get(District.NAME), joins.getCommunity().get(Community.NAME), caseRoot.get(Case.FACILITY_TYPE), joins.getFacility().get(Facility.NAME), joins.getFacility().get(Facility.UUID), caseRoot.get(Case.HEALTH_FACILITY_DETAILS), joins.getPointOfEntry().get(PointOfEntry.NAME), joins.getPointOfEntry().get(PointOfEntry.UUID), caseRoot.get(Case.POINT_OF_ENTRY_DETAILS), caseRoot.get(Case.CASE_CLASSIFICATION), caseRoot.get(Case.CLINICAL_CONFIRMATION), caseRoot.get(Case.EPIDEMIOLOGICAL_CONFIRMATION), caseRoot.get(Case.LABORATORY_DIAGNOSTIC_CONFIRMATION), caseRoot.get(Case.NOT_A_CASE_REASON_NEGATIVE_TEST), caseRoot.get(Case.NOT_A_CASE_REASON_PHYSICIAN_INFORMATION), caseRoot.get(Case.NOT_A_CASE_REASON_DIFFERENT_PATHOGEN), caseRoot.get(Case.NOT_A_CASE_REASON_OTHER), caseRoot.get(Case.NOT_A_CASE_REASON_DETAILS), caseRoot.get(Case.INVESTIGATION_STATUS), caseRoot.get(Case.INVESTIGATED_DATE), caseRoot.get(Case.OUTCOME), caseRoot.get(Case.OUTCOME_DATE), caseRoot.get(Case.SEQUELAE), caseRoot.get(Case.SEQUELAE_DETAILS), caseRoot.get(Case.BLOOD_ORGAN_OR_TISSUE_DONATED), caseRoot.get(Case.FOLLOW_UP_STATUS), caseRoot.get(Case.FOLLOW_UP_UNTIL), caseRoot.get(Case.NOSOCOMIAL_OUTBREAK), caseRoot.get(Case.INFECTION_SETTING), caseRoot.get(Case.PROHIBITION_TO_WORK), caseRoot.get(Case.PROHIBITION_TO_WORK_FROM), caseRoot.get(Case.PROHIBITION_TO_WORK_UNTIL), caseRoot.get(Case.RE_INFECTION), caseRoot.get(Case.PREVIOUS_INFECTION_DATE), caseRoot.get(Case.REINFECTION_STATUS), caseRoot.get(Case.REINFECTION_DETAILS), // quarantine
    caseRoot.get(Case.QUARANTINE), caseRoot.get(Case.QUARANTINE_TYPE_DETAILS), caseRoot.get(Case.QUARANTINE_FROM), caseRoot.get(Case.QUARANTINE_TO), caseRoot.get(Case.QUARANTINE_HELP_NEEDED), caseRoot.get(Case.QUARANTINE_ORDERED_VERBALLY), caseRoot.get(Case.QUARANTINE_ORDERED_OFFICIAL_DOCUMENT), caseRoot.get(Case.QUARANTINE_ORDERED_VERBALLY_DATE), caseRoot.get(Case.QUARANTINE_ORDERED_OFFICIAL_DOCUMENT_DATE), caseRoot.get(Case.QUARANTINE_EXTENDED), caseRoot.get(Case.QUARANTINE_REDUCED), caseRoot.get(Case.QUARANTINE_OFFICIAL_ORDER_SENT), caseRoot.get(Case.QUARANTINE_OFFICIAL_ORDER_SENT_DATE), joins.getHospitalization().get(Hospitalization.ADMITTED_TO_HEALTH_FACILITY), joins.getHospitalization().get(Hospitalization.ADMISSION_DATE), joins.getHospitalization().get(Hospitalization.DISCHARGE_DATE), joins.getHospitalization().get(Hospitalization.LEFT_AGAINST_ADVICE), joins.getPerson().get(Person.PRESENT_CONDITION), joins.getPerson().get(Person.DEATH_DATE), joins.getPerson().get(Person.BURIAL_DATE), joins.getPerson().get(Person.BURIAL_CONDUCTOR), joins.getPerson().get(Person.BURIAL_PLACE_DESCRIPTION), // address
    joins.getPersonAddressRegion().get(Region.NAME), joins.getPersonAddressDistrict().get(District.NAME), joins.getPersonAddressCommunity().get(Community.NAME), joins.getPersonAddress().get(Location.CITY), joins.getPersonAddress().get(Location.STREET), joins.getPersonAddress().get(Location.HOUSE_NUMBER), joins.getPersonAddress().get(Location.ADDITIONAL_INFORMATION), joins.getPersonAddress().get(Location.POSTAL_CODE), joins.getPersonAddressFacility().get(Facility.NAME), joins.getPersonAddressFacility().get(Facility.UUID), joins.getPersonAddress().get(Location.FACILITY_DETAILS), // phone
    caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_PHONE_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_PHONE_OWNER_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_EMAIL_SUBQUERY), caseQueryContext.getSubqueryExpression(CaseQueryContext.PERSON_OTHER_CONTACT_DETAILS_SUBQUERY), joins.getPerson().get(Person.EDUCATION_TYPE), joins.getPerson().get(Person.EDUCATION_DETAILS), joins.getPerson().get(Person.OCCUPATION_TYPE), joins.getPerson().get(Person.OCCUPATION_DETAILS), joins.getPerson().get(Person.ARMED_FORCES_RELATION_TYPE), joins.getEpiData().get(EpiData.CONTACT_WITH_SOURCE_CASE_KNOWN), caseRoot.get(Case.VACCINATION_STATUS), caseRoot.get(Case.POSTPARTUM), caseRoot.get(Case.TRIMESTER), eventCountSq, caseRoot.get(Case.EXTERNAL_ID), caseRoot.get(Case.EXTERNAL_TOKEN), caseRoot.get(Case.INTERNAL_TOKEN), joins.getPerson().get(Person.BIRTH_NAME), joins.getPersonBirthCountry().get(Country.ISO_CODE), joins.getPersonBirthCountry().get(Country.DEFAULT_NAME), joins.getPersonCitizenship().get(Country.ISO_CODE), joins.getPersonCitizenship().get(Country.DEFAULT_NAME), caseRoot.get(Case.CASE_IDENTIFICATION_SOURCE), caseRoot.get(Case.SCREENING_TYPE), // responsible jurisdiction
    joins.getResponsibleRegion().get(Region.NAME), joins.getResponsibleDistrict().get(District.NAME), joins.getResponsibleCommunity().get(Community.NAME), caseRoot.get(Case.CLINICIAN_NAME), caseRoot.get(Case.CLINICIAN_PHONE), caseRoot.get(Case.CLINICIAN_EMAIL), joins.getReportingUser().get(User.ID), joins.getFollowUpStatusChangeUser().get(User.ID), caseRoot.get(Case.PREVIOUS_QUARANTINE_TO), caseRoot.get(Case.QUARANTINE_CHANGE_COMMENT), JurisdictionHelper.booleanSelector(cb, service.inJurisdictionOrOwned(caseQueryContext)));
    // @formatter:on
    cq.distinct(true);
    Predicate filter = service.createUserFilter(cb, cq, caseRoot);
    if (caseCriteria != null) {
        Predicate criteriaFilter = service.createCriteriaFilter(caseCriteria, caseQueryContext);
        filter = CriteriaBuilderHelper.and(cb, filter, criteriaFilter);
    }
    filter = CriteriaBuilderHelper.andInValues(selectedRows, filter, cb, caseRoot.get(Case.UUID));
    if (filter != null) {
        cq.where(filter);
    }
    /*
		 * Sort by report date DESC, but also by id for stable Sorting in case of equal report dates.
		 * Since this method supports paging, values might jump between pages when sorting is unstable.
		 */
    cq.orderBy(cb.desc(caseRoot.get(Case.REPORT_DATE)), cb.desc(caseRoot.get(Case.ID)));
    List<CaseExportDto> resultList = QueryHelper.getResultList(em, cq, first, max);
    List<Long> resultCaseIds = resultList.stream().map(CaseExportDto::getId).collect(Collectors.toList());
    if (!resultList.isEmpty()) {
        Map<Long, Symptoms> symptoms = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseDataDto.SYMPTOMS)) {
            List<Symptoms> symptomsList = null;
            CriteriaQuery<Symptoms> symptomsCq = cb.createQuery(Symptoms.class);
            Root<Symptoms> symptomsRoot = symptomsCq.from(Symptoms.class);
            Expression<String> symptomsIdsExpr = symptomsRoot.get(Symptoms.ID);
            symptomsCq.where(symptomsIdsExpr.in(resultList.stream().map(CaseExportDto::getSymptomsId).collect(Collectors.toList())));
            symptomsList = em.createQuery(symptomsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            symptoms = symptomsList.stream().collect(Collectors.toMap(Symptoms::getId, Function.identity()));
        }
        Map<Long, Location> personAddresses = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, PersonDto.ADDRESS, CaseExportDto.ADDRESS_GPS_COORDINATES)) {
            CriteriaQuery<Location> personAddressesCq = cb.createQuery(Location.class);
            Root<Location> personAddressesRoot = personAddressesCq.from(Location.class);
            Expression<String> personAddressesIdsExpr = personAddressesRoot.get(Location.ID);
            personAddressesCq.where(personAddressesIdsExpr.in(resultList.stream().map(CaseExportDto::getPersonAddressId).collect(Collectors.toList())));
            List<Location> personAddressesList = em.createQuery(personAddressesCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            personAddresses = personAddressesList.stream().collect(Collectors.toMap(Location::getId, Function.identity()));
        }
        Map<Long, Integer> prescriptionCounts = null;
        Map<Long, Integer> treatmentCounts = null;
        Map<Long, Integer> clinicalVisitCounts = null;
        Map<Long, HealthConditions> healthConditions = null;
        if (exportType == null || exportType == CaseExportType.CASE_MANAGEMENT) {
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_PRESCRIPTIONS)) {
                prescriptionCounts = prescriptionService.getPrescriptionCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_TREATMENTS)) {
                treatmentCounts = treatmentService.getTreatmentCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_CLINICAL_VISITS)) {
                clinicalVisitCounts = clinicalVisitService.getClinicalVisitCountByCases(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> ((Long) e[1]).intValue()));
            }
            if (ExportHelper.shouldExportFields(exportConfiguration, CaseDataDto.HEALTH_CONDITIONS)) {
                List<HealthConditions> healthConditionsList = null;
                CriteriaQuery<HealthConditions> healthConditionsCq = cb.createQuery(HealthConditions.class);
                Root<HealthConditions> healthConditionsRoot = healthConditionsCq.from(HealthConditions.class);
                Expression<String> healthConditionsIdsExpr = healthConditionsRoot.get(HealthConditions.ID);
                healthConditionsCq.where(healthConditionsIdsExpr.in(resultList.stream().map(CaseExportDto::getHealthConditionsId).collect(Collectors.toList())));
                healthConditionsList = em.createQuery(healthConditionsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
                healthConditions = healthConditionsList.stream().collect(Collectors.toMap(HealthConditions::getId, Function.identity()));
            }
        }
        Map<Long, PreviousHospitalization> firstPreviousHospitalizations = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.INITIAL_DETECTION_PLACE)) {
            List<PreviousHospitalization> prevHospsList = null;
            CriteriaQuery<PreviousHospitalization> prevHospsCq = cb.createQuery(PreviousHospitalization.class);
            Root<PreviousHospitalization> prevHospsRoot = prevHospsCq.from(PreviousHospitalization.class);
            Join<PreviousHospitalization, Hospitalization> prevHospsHospitalizationJoin = prevHospsRoot.join(PreviousHospitalization.HOSPITALIZATION, JoinType.LEFT);
            Expression<String> hospitalizationIdsExpr = prevHospsHospitalizationJoin.get(Hospitalization.ID);
            prevHospsCq.where(hospitalizationIdsExpr.in(resultList.stream().map(CaseExportDto::getHospitalizationId).collect(Collectors.toList())));
            prevHospsCq.orderBy(cb.asc(prevHospsRoot.get(PreviousHospitalization.ADMISSION_DATE)));
            prevHospsList = em.createQuery(prevHospsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            firstPreviousHospitalizations = prevHospsList.stream().collect(Collectors.toMap(p -> p.getHospitalization().getId(), Function.identity(), (id1, id2) -> id1));
        }
        Map<Long, CaseClassification> sourceCaseClassifications = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.MAX_SOURCE_CASE_CLASSIFICATION)) {
            sourceCaseClassifications = contactService.getSourceCaseClassifications(resultCaseIds).stream().collect(Collectors.toMap(e -> (Long) e[0], e -> (CaseClassification) e[1], (c1, c2) -> c1.getSeverity() >= c2.getSeverity() ? c1 : c2));
        }
        List<Long> caseIdsWithOutbreak = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.ASSOCIATED_WITH_OUTBREAK)) {
            caseIdsWithOutbreak = outbreakService.getCaseIdsWithOutbreak(resultCaseIds);
        }
        Map<Long, List<Exposure>> exposures = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.TRAVELED, CaseExportDto.TRAVEL_HISTORY, CaseExportDto.BURIAL_ATTENDED)) {
            CriteriaQuery<Exposure> exposuresCq = cb.createQuery(Exposure.class);
            Root<Exposure> exposuresRoot = exposuresCq.from(Exposure.class);
            Join<Exposure, EpiData> exposuresEpiDataJoin = exposuresRoot.join(Exposure.EPI_DATA, JoinType.LEFT);
            Expression<String> epiDataIdsExpr = exposuresEpiDataJoin.get(EpiData.ID);
            Predicate exposuresPredicate = cb.and(epiDataIdsExpr.in(resultList.stream().map(CaseExportDto::getEpiDataId).collect(Collectors.toList())), cb.or(cb.equal(exposuresRoot.get(Exposure.EXPOSURE_TYPE), ExposureType.TRAVEL), cb.equal(exposuresRoot.get(Exposure.EXPOSURE_TYPE), ExposureType.BURIAL)));
            exposuresCq.where(exposuresPredicate);
            exposuresCq.orderBy(cb.asc(exposuresEpiDataJoin.get(EpiData.ID)));
            List<Exposure> exposureList = em.createQuery(exposuresCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            exposures = exposureList.stream().collect(Collectors.groupingBy(e -> e.getEpiData().getId()));
        }
        Map<Long, List<Sample>> samples = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.SAMPLE_INFORMATION)) {
            List<Sample> samplesList = null;
            CriteriaQuery<Sample> samplesCq = cb.createQuery(Sample.class);
            Root<Sample> samplesRoot = samplesCq.from(Sample.class);
            Join<Sample, Case> samplesCaseJoin = samplesRoot.join(Sample.ASSOCIATED_CASE, JoinType.LEFT);
            Expression<String> caseIdsExpr = samplesCaseJoin.get(Case.ID);
            samplesCq.where(caseIdsExpr.in(resultCaseIds));
            samplesList = em.createQuery(samplesCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            samples = samplesList.stream().collect(Collectors.groupingBy(s -> s.getAssociatedCase().getId()));
        }
        List<VisitSummaryExportDetails> visitSummaries = null;
        if (featureConfigurationFacade.isFeatureEnabled(FeatureType.CASE_FOLLOWUP) && ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.NUMBER_OF_VISITS, CaseExportDto.LAST_COOPERATIVE_VISIT_DATE, CaseExportDto.LAST_COOPERATIVE_VISIT_SYMPTOMATIC, CaseExportDto.LAST_COOPERATIVE_VISIT_SYMPTOMS)) {
            CriteriaQuery<VisitSummaryExportDetails> visitsCq = cb.createQuery(VisitSummaryExportDetails.class);
            Root<Case> visitsCqRoot = visitsCq.from(Case.class);
            Join<Case, Visit> visitsJoin = visitsCqRoot.join(Case.VISITS, JoinType.LEFT);
            Join<Visit, Symptoms> visitSymptomsJoin = visitsJoin.join(Visit.SYMPTOMS, JoinType.LEFT);
            visitsCq.where(CriteriaBuilderHelper.and(cb, visitsCqRoot.get(AbstractDomainObject.ID).in(resultCaseIds), cb.isNotEmpty(visitsCqRoot.get(Case.VISITS))));
            visitsCq.multiselect(visitsCqRoot.get(AbstractDomainObject.ID), visitsJoin.get(Visit.VISIT_DATE_TIME), visitsJoin.get(Visit.VISIT_STATUS), visitSymptomsJoin);
            visitSummaries = em.createQuery(visitsCq).getResultList();
        }
        Map<Long, List<Immunization>> immunizations = null;
        if ((exportType == null || exportType == CaseExportType.CASE_SURVEILLANCE) && (exportConfiguration == null || exportConfiguration.getProperties().stream().anyMatch(p -> StringUtils.equalsAny(p, ExportHelper.getVaccinationExportProperties())))) {
            List<Immunization> immunizationList;
            CriteriaQuery<Immunization> immunizationsCq = cb.createQuery(Immunization.class);
            Root<Immunization> immunizationsCqRoot = immunizationsCq.from(Immunization.class);
            Join<Immunization, Person> personJoin = immunizationsCqRoot.join(Immunization.PERSON, JoinType.LEFT);
            Expression<String> personIdsExpr = personJoin.get(Person.ID);
            immunizationsCq.where(CriteriaBuilderHelper.and(cb, cb.or(cb.equal(immunizationsCqRoot.get(Immunization.MEANS_OF_IMMUNIZATION), MeansOfImmunization.VACCINATION), cb.equal(immunizationsCqRoot.get(Immunization.MEANS_OF_IMMUNIZATION), MeansOfImmunization.VACCINATION_RECOVERY)), personIdsExpr.in(resultList.stream().map(CaseExportDto::getPersonId).collect(Collectors.toList()))));
            immunizationsCq.select(immunizationsCqRoot);
            immunizationList = em.createQuery(immunizationsCq).setHint(ModelConstants.HINT_HIBERNATE_READ_ONLY, true).getResultList();
            immunizations = immunizationList.stream().collect(Collectors.groupingBy(i -> i.getPerson().getId()));
        }
        // Load latest events info
        // Adding a second query here is not perfect, but selecting the last event with a criteria query
        // doesn't seem to be possible and using a native query is not an option because of user filters
        List<EventSummaryDetails> eventSummaries = null;
        if (ExportHelper.shouldExportFields(exportConfiguration, CaseExportDto.LATEST_EVENT_ID, CaseExportDto.LATEST_EVENT_STATUS, CaseExportDto.LATEST_EVENT_TITLE)) {
            eventSummaries = eventService.getEventSummaryDetailsByCases(resultCaseIds);
        }
        Map<Long, UserReference> caseUsers = getCaseUsersForExport(resultList, exportConfiguration);
        Pseudonymizer pseudonymizer = Pseudonymizer.getDefault(userService::hasRight, I18nProperties.getCaption(Captions.inaccessibleValue));
        for (CaseExportDto exportDto : resultList) {
            final boolean inJurisdiction = exportDto.getInJurisdiction();
            if (exportConfiguration == null || exportConfiguration.getProperties().contains(CaseExportDto.COUNTRY)) {
                exportDto.setCountry(configFacade.getEpidPrefix());
            }
            if (symptoms != null) {
                Optional.ofNullable(symptoms.get(exportDto.getSymptomsId())).ifPresent(symptom -> exportDto.setSymptoms(SymptomsFacadeEjb.toDto(symptom)));
            }
            if (personAddresses != null || exportConfiguration.getProperties().contains(CaseExportDto.ADDRESS_GPS_COORDINATES)) {
                Optional.ofNullable(personAddresses.get(exportDto.getPersonAddressId())).ifPresent(personAddress -> exportDto.setAddressGpsCoordinates(personAddress.buildGpsCoordinatesCaption()));
            }
            if (prescriptionCounts != null) {
                Optional.ofNullable(prescriptionCounts.get(exportDto.getId())).ifPresent(prescriptionCount -> exportDto.setNumberOfPrescriptions(prescriptionCount));
            }
            if (treatmentCounts != null) {
                Optional.ofNullable(treatmentCounts.get(exportDto.getId())).ifPresent(treatmentCount -> exportDto.setNumberOfTreatments(treatmentCount));
            }
            if (clinicalVisitCounts != null) {
                Optional.ofNullable(clinicalVisitCounts.get(exportDto.getId())).ifPresent(clinicalVisitCount -> exportDto.setNumberOfClinicalVisits(clinicalVisitCount));
            }
            if (healthConditions != null) {
                Optional.ofNullable(healthConditions.get(exportDto.getHealthConditionsId())).ifPresent(healthCondition -> exportDto.setHealthConditions(healthConditionsMapper.toDto(healthCondition)));
            }
            if (firstPreviousHospitalizations != null) {
                Optional.ofNullable(firstPreviousHospitalizations.get(exportDto.getHospitalizationId())).ifPresent(firstPreviousHospitalization -> {
                    if (firstPreviousHospitalization.getHealthFacility() != null) {
                        exportDto.setInitialDetectionPlace(FacilityHelper.buildFacilityString(firstPreviousHospitalization.getHealthFacility().getUuid(), firstPreviousHospitalization.getHealthFacility().getName(), firstPreviousHospitalization.getHealthFacilityDetails()));
                    } else {
                        exportDto.setInitialDetectionPlace(I18nProperties.getCaption(Captions.unknown));
                    }
                });
                if (StringUtils.isEmpty(exportDto.getInitialDetectionPlace())) {
                    if (!StringUtils.isEmpty(exportDto.getHealthFacility())) {
                        exportDto.setInitialDetectionPlace(exportDto.getHealthFacility());
                    } else {
                        exportDto.setInitialDetectionPlace(exportDto.getPointOfEntry());
                    }
                }
            }
            if (sourceCaseClassifications != null) {
                Optional.ofNullable(sourceCaseClassifications.get(exportDto.getId())).ifPresent(sourceCaseClassification -> exportDto.setMaxSourceCaseClassification(sourceCaseClassification));
            }
            if (caseIdsWithOutbreak != null) {
                exportDto.setAssociatedWithOutbreak(caseIdsWithOutbreak.contains(exportDto.getId()));
            }
            if (exposures != null) {
                Optional.ofNullable(exposures.get(exportDto.getEpiDataId())).ifPresent(caseExposures -> {
                    StringBuilder travelHistoryBuilder = new StringBuilder();
                    if (caseExposures.stream().anyMatch(e -> ExposureType.BURIAL.equals(e.getExposureType()))) {
                        exportDto.setBurialAttended(true);
                    }
                    caseExposures.stream().filter(e -> ExposureType.TRAVEL.equals(e.getExposureType())).forEach(exposure -> travelHistoryBuilder.append(EpiDataHelper.buildDetailedTravelString(exposure.getLocation().toString(), exposure.getDescription(), exposure.getStartDate(), exposure.getEndDate(), userLanguage)).append(", "));
                    if (travelHistoryBuilder.length() > 0) {
                        exportDto.setTraveled(true);
                        travelHistoryBuilder.delete(travelHistoryBuilder.lastIndexOf(", "), travelHistoryBuilder.length() - 1);
                    }
                    exportDto.setTravelHistory(travelHistoryBuilder.toString());
                });
            }
            if (samples != null) {
                Optional.ofNullable(samples.get(exportDto.getId())).ifPresent(caseSamples -> {
                    int count = 0;
                    caseSamples.sort((o1, o2) -> o2.getSampleDateTime().compareTo(o1.getSampleDateTime()));
                    for (Sample sample : caseSamples) {
                        EmbeddedSampleExportDto sampleDto = new EmbeddedSampleExportDto(sample.getUuid(), sample.getSampleDateTime(), sample.getLab() != null ? FacilityHelper.buildFacilityString(sample.getLab().getUuid(), sample.getLab().getName(), sample.getLabDetails()) : null, sample.getPathogenTestResult());
                        switch(++count) {
                            case 1:
                                exportDto.setSample1(sampleDto);
                                break;
                            case 2:
                                exportDto.setSample2(sampleDto);
                                break;
                            case 3:
                                exportDto.setSample3(sampleDto);
                                break;
                            default:
                                exportDto.addOtherSample(sampleDto);
                        }
                    }
                });
            }
            if (immunizations != null) {
                Optional.ofNullable(immunizations.get(exportDto.getPersonId())).ifPresent(caseImmunizations -> {
                    List<Immunization> filteredImmunizations = caseImmunizations.stream().filter(i -> i.getDisease() == exportDto.getDisease()).collect(Collectors.toList());
                    if (!filteredImmunizations.isEmpty()) {
                        filteredImmunizations.sort(Comparator.comparing(i -> ImmunizationEntityHelper.getDateForComparison(i, false)));
                        Immunization mostRecentImmunization = filteredImmunizations.get(filteredImmunizations.size() - 1);
                        Integer numberOfDoses = mostRecentImmunization.getNumberOfDoses();
                        exportDto.setNumberOfDoses(numberOfDoses != null ? String.valueOf(numberOfDoses) : "");
                        if (CollectionUtils.isNotEmpty(mostRecentImmunization.getVaccinations())) {
                            List<Vaccination> sortedVaccinations = mostRecentImmunization.getVaccinations().stream().sorted(Comparator.comparing(ImmunizationEntityHelper::getVaccinationDateForComparison)).collect(Collectors.toList());
                            Vaccination firstVaccination = sortedVaccinations.get(0);
                            Vaccination lastVaccination = sortedVaccinations.get(sortedVaccinations.size() - 1);
                            exportDto.setFirstVaccinationDate(firstVaccination.getVaccinationDate());
                            exportDto.setLastVaccinationDate(lastVaccination.getVaccinationDate());
                            exportDto.setVaccineName(lastVaccination.getVaccineName());
                            exportDto.setOtherVaccineName(lastVaccination.getOtherVaccineName());
                            exportDto.setVaccineManufacturer(lastVaccination.getVaccineManufacturer());
                            exportDto.setOtherVaccineManufacturer(lastVaccination.getOtherVaccineManufacturer());
                            exportDto.setVaccinationInfoSource(lastVaccination.getVaccinationInfoSource());
                            exportDto.setVaccineAtcCode(lastVaccination.getVaccineAtcCode());
                            exportDto.setVaccineBatchNumber(lastVaccination.getVaccineBatchNumber());
                            exportDto.setVaccineUniiCode(lastVaccination.getVaccineUniiCode());
                            exportDto.setVaccineInn(lastVaccination.getVaccineInn());
                        }
                    }
                });
            }
            if (visitSummaries != null) {
                List<VisitSummaryExportDetails> visits = visitSummaries.stream().filter(v -> v.getContactId() == exportDto.getId()).collect(Collectors.toList());
                VisitSummaryExportDetails lastCooperativeVisit = visits.stream().filter(v -> v.getVisitStatus() == VisitStatus.COOPERATIVE).max(Comparator.comparing(VisitSummaryExportDetails::getVisitDateTime)).orElse(null);
                exportDto.setNumberOfVisits(visits.size());
                if (lastCooperativeVisit != null) {
                    exportDto.setLastCooperativeVisitDate(lastCooperativeVisit.getVisitDateTime());
                    SymptomsDto visitSymptoms = SymptomsFacadeEjb.toDto(lastCooperativeVisit.getSymptoms());
                    pseudonymizer.pseudonymizeDto(SymptomsDto.class, visitSymptoms, inJurisdiction, null);
                    exportDto.setLastCooperativeVisitSymptoms(SymptomsHelper.buildSymptomsHumanString(visitSymptoms, true, userLanguage));
                    exportDto.setLastCooperativeVisitSymptomatic(visitSymptoms.getSymptomatic() == null ? YesNoUnknown.UNKNOWN : (visitSymptoms.getSymptomatic() ? YesNoUnknown.YES : YesNoUnknown.NO));
                }
            }
            if (eventSummaries != null && exportDto.getEventCount() != 0) {
                eventSummaries.stream().filter(v -> v.getCaseId() == exportDto.getId()).max(Comparator.comparing(EventSummaryDetails::getEventDate)).ifPresent(eventSummary -> {
                    exportDto.setLatestEventId(eventSummary.getEventUuid());
                    exportDto.setLatestEventStatus(eventSummary.getEventStatus());
                    exportDto.setLatestEventTitle(eventSummary.getEventTitle());
                });
            }
            if (!caseUsers.isEmpty()) {
                if (exportDto.getReportingUserId() != null) {
                    UserReference user = caseUsers.get(exportDto.getReportingUserId());
                    exportDto.setReportingUserName(user.getName());
                    exportDto.setReportingUserRoles(user.getUserRoles());
                }
                if (exportDto.getFollowUpStatusChangeUserId() != null) {
                    UserReference user = caseUsers.get(exportDto.getFollowUpStatusChangeUserId());
                    exportDto.setFollowUpStatusChangeUserName(user.getName());
                    exportDto.setFollowUpStatusChangeUserRoles(user.getUserRoles());
                }
            }
            pseudonymizer.pseudonymizeDto(CaseExportDto.class, exportDto, inJurisdiction, c -> {
                pseudonymizer.pseudonymizeDto(BirthDateDto.class, c.getBirthdate(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample1(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample2(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(EmbeddedSampleExportDto.class, c.getSample3(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDtoCollection(EmbeddedSampleExportDto.class, c.getOtherSamples(), s -> inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(BurialInfoDto.class, c.getBurialInfo(), inJurisdiction, null);
                pseudonymizer.pseudonymizeDto(SymptomsDto.class, c.getSymptoms(), inJurisdiction, null);
            });
        }
    }
    caseCriteria.setMustHaveCaseManagementData(previousCaseManagementDataCriteria);
    return resultList;
}
Also used : VisitService(de.symeda.sormas.backend.visit.VisitService) PlagueType(de.symeda.sormas.api.caze.PlagueType) VisitStatus(de.symeda.sormas.api.visit.VisitStatus) CaseSimilarityCriteria(de.symeda.sormas.api.caze.CaseSimilarityCriteria) DistrictService(de.symeda.sormas.backend.infrastructure.district.DistrictService) StringUtils(org.apache.commons.lang3.StringUtils) PersonDto(de.symeda.sormas.api.person.PersonDto) TaskHelper(de.symeda.sormas.api.task.TaskHelper) AbstractCoreFacadeEjb(de.symeda.sormas.backend.common.AbstractCoreFacadeEjb) TransactionAttributeType(javax.ejb.TransactionAttributeType) CaseExportDto(de.symeda.sormas.api.caze.CaseExportDto) Duration(java.time.Duration) Map(java.util.Map) TreatmentFacadeEjb(de.symeda.sormas.backend.therapy.TreatmentFacadeEjb) DocumentRelatedEntityType(de.symeda.sormas.api.document.DocumentRelatedEntityType) PrescriptionDto(de.symeda.sormas.api.therapy.PrescriptionDto) CriteriaQuery(javax.persistence.criteria.CriteriaQuery) 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MeansOfImmunization(de.symeda.sormas.api.immunization.MeansOfImmunization) Exposure(de.symeda.sormas.backend.exposure.Exposure) UserReference(de.symeda.sormas.backend.user.UserReference) EventSummaryDetails(de.symeda.sormas.backend.event.EventSummaryDetails) AtomicLong(java.util.concurrent.atomic.AtomicLong) PreviousHospitalization(de.symeda.sormas.backend.hospitalization.PreviousHospitalization) Person(de.symeda.sormas.backend.person.Person) EventParticipant(de.symeda.sormas.backend.event.EventParticipant) Symptoms(de.symeda.sormas.backend.symptoms.Symptoms) Visit(de.symeda.sormas.backend.visit.Visit) ClinicalVisit(de.symeda.sormas.backend.clinicalcourse.ClinicalVisit) Vaccination(de.symeda.sormas.backend.vaccination.Vaccination) VisitSummaryExportDetails(de.symeda.sormas.backend.contact.VisitSummaryExportDetails) EpiData(de.symeda.sormas.backend.epidata.EpiData) CaseJoins(de.symeda.sormas.utils.CaseJoins) CaseClassification(de.symeda.sormas.api.caze.CaseClassification) Sample(de.symeda.sormas.backend.sample.Sample) Hospitalization(de.symeda.sormas.backend.hospitalization.Hospitalization) PreviousHospitalization(de.symeda.sormas.backend.hospitalization.PreviousHospitalization) HealthConditions(de.symeda.sormas.backend.clinicalcourse.HealthConditions) CaseExportDto(de.symeda.sormas.api.caze.CaseExportDto) EmbeddedSampleExportDto(de.symeda.sormas.api.caze.EmbeddedSampleExportDto) Event(de.symeda.sormas.backend.event.Event) Location(de.symeda.sormas.backend.location.Location) TransactionAttribute(javax.ejb.TransactionAttribute)

Aggregations

Location (de.symeda.sormas.backend.location.Location)31 CriteriaBuilder (javax.persistence.criteria.CriteriaBuilder)27 Predicate (javax.persistence.criteria.Predicate)19 ArrayList (java.util.ArrayList)15 Case (de.symeda.sormas.backend.caze.Case)14 Person (de.symeda.sormas.backend.person.Person)14 Contact (de.symeda.sormas.backend.contact.Contact)13 District (de.symeda.sormas.backend.infrastructure.district.District)13 SortProperty (de.symeda.sormas.api.utils.SortProperty)9 User (de.symeda.sormas.backend.user.User)9 Order (javax.persistence.criteria.Order)9 Date (java.util.Date)8 List (java.util.List)8 Region (de.symeda.sormas.backend.infrastructure.region.Region)7 Expression (javax.persistence.criteria.Expression)7 Pseudonymizer (de.symeda.sormas.backend.util.Pseudonymizer)6 AbstractDomainObject (de.symeda.sormas.backend.common.AbstractDomainObject)5 EventParticipant (de.symeda.sormas.backend.event.EventParticipant)5 HashMap (java.util.HashMap)5 CriteriaBuilderHelper (de.symeda.sormas.backend.common.CriteriaBuilderHelper)4