Examples with RectangleShape net.imglib2.algorithm.neighborhood.RectangleShape used on opensource projects

Example 16 with RectangleShape

use of net.imglib2.algorithm.neighborhood.RectangleShape in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalSauvolaResultsConsistency.

/**
 * @see LocalSauvolaThresholdIntegral
 * @see LocalSauvolaThreshold
 */
@Test
public void testLocalSauvolaResultsConsistency() {
    Img<BitType> out2 = null;
    Img<BitType> out3 = null;
    try {
        out2 = in.factory().imgFactory(new BitType()).create(in, new BitType());
        out3 = in.factory().imgFactory(new BitType()).create(in, new BitType());
    } catch (IncompatibleTypeException exc) {
        exc.printStackTrace();
    }
    // Default implementation
    ops.run(LocalSauvolaThreshold.class, out2, normalizedIn, new RectangleShape(2, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.5, 0.5);
    // Integral image-based implementation
    ops.run(LocalSauvolaThresholdIntegral.class, out3, normalizedIn, new RectangleShape(2, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.5, 0.5);
    testIterableIntervalSimilarity(out2, out3);
}

Example 17 with RectangleShape

use of net.imglib2.algorithm.neighborhood.RectangleShape in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalIsoDataThreshold.

/**
 * @see LocalIsoDataThreshold
 */
@Test
public void testLocalIsoDataThreshold() {
    // NB: Test fails for RectangleShapes of span 1
    ops.run(IsoData.class, out, in, new RectangleShape(2, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(true, out.firstElement().get());
}

Example 18 with RectangleShape

use of net.imglib2.algorithm.neighborhood.RectangleShape in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalPercentileThreshold.

/**
 * @see LocalPercentileThreshold
 */
@Test
public void testLocalPercentileThreshold() {
    ops.run(Percentile.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(false, out.firstElement().get());
}

Example 19 with RectangleShape

use of net.imglib2.algorithm.neighborhood.RectangleShape in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalHuangThreshold.

/**
 * @see LocalHuangThreshold
 */
@Test
public void testLocalHuangThreshold() {
    ops.run(Huang.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(true, out.firstElement().get());
}

Example 20 with RectangleShape

use of net.imglib2.algorithm.neighborhood.RectangleShape in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalTriangleThreshold.

/**
 * @see LocalTriangleThreshold
 */
@Test
public void testLocalTriangleThreshold() {
    ops.run(Triangle.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(false, out.firstElement().get());
}