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Example 6 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalShanbhagThreshold.

/**
 * @see LocalShanbhagThreshold
 */
@Test
public void testLocalShanbhagThreshold() {
    ops.run(Shanbhag.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(false, out.firstElement().get());
}
Also used : Img(net.imglib2.img.Img) ArrayImg(net.imglib2.img.array.ArrayImg) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 7 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalNiblackThresholdIntegral.

/**
 * @see LocalNiblackThresholdIntegral
 */
@Test
public void testLocalNiblackThresholdIntegral() {
    ops.run(LocalNiblackThresholdIntegral.class, out, in, new RectangleShape(3, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.2, 0.0);
    assertEquals(true, out.firstElement().get());
}
Also used : Img(net.imglib2.img.Img) ArrayImg(net.imglib2.img.array.ArrayImg) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 8 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalNiblackThreshold.

/**
 * @see LocalNiblackThreshold
 */
@Test
public void testLocalNiblackThreshold() {
    ops.run(LocalNiblackThreshold.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.2, 0.0);
    assertEquals(true, out.firstElement().get());
}
Also used : Img(net.imglib2.img.Img) ArrayImg(net.imglib2.img.array.ArrayImg) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 9 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalLiThreshold.

/**
 * @see LocalLiThreshold
 */
@Test
public void testLocalLiThreshold() {
    ops.run(Li.class, out, in, new RectangleShape(1, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE));
    assertEquals(true, out.firstElement().get());
}
Also used : Img(net.imglib2.img.Img) ArrayImg(net.imglib2.img.array.ArrayImg) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 10 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class LocalThresholdTest method testLocalMeanResultsConsistency.

/**
 * @see LocalMeanThresholdIntegral
 * @see LocalMeanThreshold
 */
@Test
public void testLocalMeanResultsConsistency() {
    Img<BitType> out2 = null;
    Img<BitType> out3 = null;
    try {
        out2 = in.factory().imgFactory(new BitType()).create(in, new BitType());
        out3 = in.factory().imgFactory(new BitType()).create(in, new BitType());
    } catch (IncompatibleTypeException exc) {
        exc.printStackTrace();
    }
    // Default implementation
    ops.run(LocalMeanThreshold.class, out2, in, new RectangleShape(2, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.0);
    // Integral image-based implementation
    ops.run(LocalMeanThresholdIntegral.class, out3, in, new RectangleShape(2, false), new OutOfBoundsMirrorFactory<ByteType, Img<ByteType>>(Boundary.SINGLE), 0.0);
    testIterableIntervalSimilarity(out2, out3);
}
Also used : Img(net.imglib2.img.Img) ArrayImg(net.imglib2.img.array.ArrayImg) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) BitType(net.imglib2.type.logic.BitType) IncompatibleTypeException(net.imglib2.exception.IncompatibleTypeException) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Aggregations

ByteType (net.imglib2.type.numeric.integer.ByteType)83 Test (org.junit.Test)78 AbstractOpTest (net.imagej.ops.AbstractOpTest)76 RectangleShape (net.imglib2.algorithm.neighborhood.RectangleShape)55 Img (net.imglib2.img.Img)49 ArrayImg (net.imglib2.img.array.ArrayImg)33 Shape (net.imglib2.algorithm.neighborhood.Shape)18 DiamondShape (net.imglib2.algorithm.neighborhood.DiamondShape)17 HorizontalLineShape (net.imglib2.algorithm.neighborhood.HorizontalLineShape)16 ArrayList (java.util.ArrayList)9 Op (net.imagej.ops.Op)9 IterableInterval (net.imglib2.IterableInterval)9 BitType (net.imglib2.type.logic.BitType)6 UnsignedByteType (net.imglib2.type.numeric.integer.UnsignedByteType)6 AbstractUnaryComputerOp (net.imagej.ops.special.computer.AbstractUnaryComputerOp)5 Ops (net.imagej.ops.Ops)4 RandomAccessibleInterval (net.imglib2.RandomAccessibleInterval)4 IncompatibleTypeException (net.imglib2.exception.IncompatibleTypeException)4 CreateImgFromImg (net.imagej.ops.create.img.CreateImgFromImg)3 MapOp (net.imagej.ops.map.MapOp)3