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Example 31 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class ErosionTest method testListErodeFull.

@Test
public void testListErodeFull() {
    final List<Shape> shapes = new ArrayList<>();
    shapes.add(new DiamondShape(1));
    shapes.add(new DiamondShape(1));
    shapes.add(new RectangleShape(1, false));
    shapes.add(new HorizontalLineShape(2, 1, false));
    final Img<ByteType> out2 = Erosion.erodeFull(in, shapes, 1);
    @SuppressWarnings("unchecked") final IterableInterval<ByteType> out1 = (IterableInterval<ByteType>) ops.run(ListErode.class, IterableInterval.class, in, shapes, true);
    assertIterationsEqual(out1, out2);
}
Also used : DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ArrayList(java.util.ArrayList) IterableInterval(net.imglib2.IterableInterval) ByteType(net.imglib2.type.numeric.integer.ByteType) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 32 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class ErosionTest method testListErode.

// @Test
public void testListErode() {
    final List<Shape> shapes = new ArrayList<>();
    shapes.add(new DiamondShape(1));
    shapes.add(new DiamondShape(1));
    shapes.add(new RectangleShape(1, false));
    shapes.add(new HorizontalLineShape(2, 1, false));
    final Img<ByteType> out2 = in.copy();
    Erosion.erode(Views.extendValue(in, new ByteType((byte) -128)), out2, shapes, 1);
    @SuppressWarnings("unchecked") final IterableInterval<ByteType> out1 = (IterableInterval<ByteType>) ops.run(ListErode.class, IterableInterval.class, in, shapes, false);
    assertIterationsEqual(out1, out2);
}
Also used : DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ArrayList(java.util.ArrayList) IterableInterval(net.imglib2.IterableInterval) ByteType(net.imglib2.type.numeric.integer.ByteType) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape)

Example 33 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class OpeningTest method testSingleOpen.

@Test
public void testSingleOpen() {
    final Shape shape = new DiamondShape(1);
    final List<Shape> shapes = Arrays.asList(shape);
    @SuppressWarnings("unchecked") final Img<ByteType> out1 = (Img<ByteType>) ops.run(ListOpen.class, Img.class, in, shapes);
    final Img<ByteType> out2 = Opening.open(in, shape, 1);
    assertIterationsEqual(out2, out1);
}
Also used : Img(net.imglib2.img.Img) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 34 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class TopHatTest method testSingleTopHat.

@Test
public void testSingleTopHat() {
    final Shape shape = new DiamondShape(1);
    final List<Shape> shapes = Arrays.asList(shape);
    @SuppressWarnings("unchecked") final Img<ByteType> out1 = (Img<ByteType>) ops.run(ListTopHat.class, Img.class, in, shapes);
    final Img<ByteType> out2 = TopHat.topHat(in, shape, 1);
    assertIterationsEqual(out2, out1);
}
Also used : Img(net.imglib2.img.Img) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) Shape(net.imglib2.algorithm.neighborhood.Shape) RectangleShape(net.imglib2.algorithm.neighborhood.RectangleShape) HorizontalLineShape(net.imglib2.algorithm.neighborhood.HorizontalLineShape) DiamondShape(net.imglib2.algorithm.neighborhood.DiamondShape) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Example 35 with ByteType

use of net.imglib2.type.numeric.integer.ByteType in project imagej-ops by imagej.

the class JoinTest method testJoinInplaceAndComputer.

@Test
public void testJoinInplaceAndComputer() {
    final Op op = ops.op(DefaultJoinInplaceAndComputer.class, out, in, inplaceOp, computerOp);
    op.run();
    // test
    final Cursor<ByteType> c = out.cursor();
    while (c.hasNext()) {
        assertEquals(2, c.next().get());
    }
}
Also used : AbstractUnaryComputerOp(net.imagej.ops.special.computer.AbstractUnaryComputerOp) Op(net.imagej.ops.Op) MapOp(net.imagej.ops.map.MapOp) UnaryComputerOp(net.imagej.ops.special.computer.UnaryComputerOp) UnaryInplaceOp(net.imagej.ops.special.inplace.UnaryInplaceOp) AbstractUnaryInplaceOp(net.imagej.ops.special.inplace.AbstractUnaryInplaceOp) ByteType(net.imglib2.type.numeric.integer.ByteType) AbstractOpTest(net.imagej.ops.AbstractOpTest) Test(org.junit.Test)

Aggregations

ByteType (net.imglib2.type.numeric.integer.ByteType)83 Test (org.junit.Test)78 AbstractOpTest (net.imagej.ops.AbstractOpTest)76 RectangleShape (net.imglib2.algorithm.neighborhood.RectangleShape)55 Img (net.imglib2.img.Img)49 ArrayImg (net.imglib2.img.array.ArrayImg)33 Shape (net.imglib2.algorithm.neighborhood.Shape)18 DiamondShape (net.imglib2.algorithm.neighborhood.DiamondShape)17 HorizontalLineShape (net.imglib2.algorithm.neighborhood.HorizontalLineShape)16 ArrayList (java.util.ArrayList)9 Op (net.imagej.ops.Op)9 IterableInterval (net.imglib2.IterableInterval)9 BitType (net.imglib2.type.logic.BitType)6 UnsignedByteType (net.imglib2.type.numeric.integer.UnsignedByteType)6 AbstractUnaryComputerOp (net.imagej.ops.special.computer.AbstractUnaryComputerOp)5 Ops (net.imagej.ops.Ops)4 RandomAccessibleInterval (net.imglib2.RandomAccessibleInterval)4 IncompatibleTypeException (net.imglib2.exception.IncompatibleTypeException)4 CreateImgFromImg (net.imagej.ops.create.img.CreateImgFromImg)3 MapOp (net.imagej.ops.map.MapOp)3