Examples with CyNetworkManagerImpl org.cytoscape.model.internal.CyNetworkManagerImpl used on opensource projects

Example 6 with CyNetworkManagerImpl

use of org.cytoscape.model.internal.CyNetworkManagerImpl in project cytoscape-impl by cytoscape.

the class TestCyNetworkFactory method getPrivateRootInstance.

public static CyRootNetwork getPrivateRootInstance(SavePolicy policy) {
    DummyCyEventHelper deh = new DummyCyEventHelper();
    CyServiceRegistrar serviceRegistrar = mockCyServiceRegistrar(deh);
    CyNetworkTableManagerImpl ntm = new CyNetworkTableManagerImpl();
    CyTableManagerImpl tm = new CyTableManagerImpl(ntm, new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
    CyRootNetworkImpl ar = new CyRootNetworkImpl(deh, tm, ntm, new CyTableFactoryImpl(deh, serviceRegistrar), serviceRegistrar, false, policy);
    return ar;
}

Example 7 with CyNetworkManagerImpl

use of org.cytoscape.model.internal.CyNetworkManagerImpl in project cytoscape-impl by cytoscape.

the class CyTableManagerTest method setUp.

@Before
public void setUp() {
    final Interpreter interpreter = new InterpreterImpl();
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    when(serviceRegistrar.getService(Interpreter.class)).thenReturn(interpreter);
    networkTableMgr = new CyNetworkTableManagerImpl();
    networkManager = new CyNetworkManagerImpl(serviceRegistrar);
    mgr = new CyTableManagerImpl(networkTableMgr, networkManager, serviceRegistrar);
    assertNotNull(mgr);
    assertEquals(0, mgr.getAllTables(true).size());
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    final CyTableFactoryImpl tableFactory = new CyTableFactoryImpl(eventHelper, serviceRegistrar);
    goodNetwork = new CyRootNetworkImpl(eventHelper, (CyTableManagerImpl) mgr, networkTableMgr, tableFactory, serviceRegistrar, true, SavePolicy.DO_NOT_SAVE).getBaseNetwork();
    networkManager.addNetwork(goodNetwork);
    globalTable = tableFactory.createTable("test table", CyIdentifiable.SUID, Long.class, true, true);
    assertNotNull(globalTable);
    assertNotNull(goodNetwork);
    assertEquals(1, networkManager.getNetworkSet().size());
}

Example 8 with CyNetworkManagerImpl

use of org.cytoscape.model.internal.CyNetworkManagerImpl in project cytoscape-impl by cytoscape.

the class TableTestSupportTest method setUp.

@Before
public void setUp() {
    eventHelper = support.getDummyCyEventHelper();
    EquationCompiler compiler = new EquationCompilerImpl(new EquationParserImpl(serviceRegistrar));
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(CyNetworkNaming.class)).thenReturn(namingUtil);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    table = factory.createTable(Integer.toString(rand.nextInt(10000)), CyIdentifiable.SUID, Long.class, false, true);
    table2 = factory.createTable(Integer.toString(rand.nextInt(10000)), CyIdentifiable.SUID, Long.class, false, true);
    attrs = table.getRow(1l);
    CyTableManagerImpl tblMgr = new CyTableManagerImpl(new CyNetworkTableManagerImpl(), new CyNetworkManagerImpl(serviceRegistrar), serviceRegistrar);
    tblMgr.addTable(table);
    ((CyTableImpl) table).handleEvent(new TableAddedEvent(tblMgr, table));
    tblMgr.addTable(table2);
    ((CyTableImpl) table2).handleEvent(new TableAddedEvent(tblMgr, table2));
}