Examples with ImplementationGuideDefn org.hl7.fhir.definitions.model.ImplementationGuideDefn used on opensource projects

Example 36 with ImplementationGuideDefn

use of org.hl7.fhir.definitions.model.ImplementationGuideDefn in project kindling by HL7.

the class ProfileGenerator method generate.

public StructureDefinition generate(Profile pack, ConstraintStructure profile, ResourceDefn resource, String id, String html, ImplementationGuideDefn usage, List<ValidationMessage> issues, ResourceDefn baseResource) throws Exception {
    if (profile.getResource() != null)
        return profile.getResource();
    StructureDefinition p = new StructureDefinition();
    p.setId(FormatUtilities.makeId(id));
    p.setUrl("http://hl7.org/fhir/StructureDefinition/" + id);
    if (usage != null && !usage.isCore()) {
        if (!id.startsWith(usage.getCode() + "-"))
            throw new Exception("Error: " + id + " must start with " + usage.getCode() + "-");
    }
    if (!resource.getRoot().getTypes().isEmpty() && (resource.getRoot().getTypes().get(0).getProfile() != null))
        p.setBaseDefinition(resource.getRoot().getTypes().get(0).getProfile());
    else
        p.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/" + resource.getName());
    if (definitions.hasType(resource.getName()))
        p.setKind(StructureDefinitionKind.COMPLEXTYPE);
    else
        p.setKind(StructureDefinitionKind.RESOURCE);
    p.setType(resource.getName());
    p.setDerivation(TypeDerivationRule.CONSTRAINT);
    p.setAbstract(false);
    p.setUserData("filename", id);
    p.setUserData("path", ((usage == null || usage.isCore()) ? "" : usage.getCode() + File.separator) + id + ".html");
    p.setTitle(pack.metadata("display"));
    p.setFhirVersion(version);
    p.setVersion(version.toCode());
    if (pack.hasMetadata("summary-" + profile.getTitle()))
        ToolingExtensions.addMarkdownExtension(p, "http://hl7.org/fhir/StructureDefinition/structuredefinition-summary", pack.metadata("summary-" + profile.getTitle()));
    ToolResourceUtilities.updateUsage(p, usage.getCode());
    p.setName(pack.metadata("name"));
    p.setPublisher(pack.metadata("author.name"));
    if (pack.hasMetadata("author.reference"))
        p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, pack.metadata("author.reference")));
    // <code> opt Zero+ Coding assist with indexing and finding</code>
    p.setDescription(resource.getRoot().getShortDefn());
    if (!p.hasDescriptionElement() && pack.hasMetadata("description"))
        p.setDescription(preProcessMarkdown(pack.metadata("description"), "pack.description"));
    p.setPurpose(resource.getRoot().getRequirements());
    if (!p.hasPurpose() && pack.hasMetadata("requirements"))
        p.setPurpose(pack.metadata("requirements"));
    p.setExperimental(Utilities.existsInList(pack.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
    if (pack.hasMetadata("date"))
        p.setDateElement(Factory.newDateTime(pack.metadata("date").substring(0, 10)));
    else
        p.setDate(genDate.getTime());
    if (pack.hasMetadata("fmm-level"))
        ToolingExtensions.addIntegerExtension(p, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(pack.getFmmLevel()));
    else if (pack.hasMetadata("fmm"))
        ToolingExtensions.addIntegerExtension(p, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(pack.metadata("fmm")));
    else if (!Utilities.noString(resource.getFmmLevel()))
        ToolingExtensions.addIntegerExtension(p, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(resource.getFmmLevel()));
    else if (baseResource != null && !Utilities.noString(baseResource.getFmmLevel()))
        ToolingExtensions.addIntegerExtension(p, ToolingExtensions.EXT_FMM_LEVEL, Integer.parseInt(baseResource.getFmmLevel()));
    if (pack.hasMetadata("workgroup"))
        ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, pack.getWg());
    else if (resource.getWg() != null)
        ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, resource.getWg().getCode());
    else if (baseResource != null && baseResource.getWg() != null)
        ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, baseResource.getWg().getCode());
    if (pack.hasMetadata("Standards-Status"))
        ToolingExtensions.setStandardsStatus(p, StandardsStatus.fromCode(pack.metadata("Standards-Status")), null);
    else
        ToolingExtensions.setStandardsStatus(p, resource.getStatus(), null);
    if (pack.hasMetadata("status"))
        p.setStatus(PublicationStatus.fromCode(pack.metadata("status")));
    if (pack.getMetadata().containsKey("code"))
        for (String s : pack.getMetadata().get("code")) if (!Utilities.noString(s))
            p.getKeyword().add(Factory.makeCoding(s));
    if (pack.hasMetadata("datadictionary"))
        ToolingExtensions.setStringExtension(p, "http://hl7.org/fhir/StructureDefinition/datadictionary", pack.metadata("datadictionary"));
    Set<String> containedSlices = new HashSet<String>();
    p.setDifferential(new StructureDefinitionDifferentialComponent());
    defineElement(pack, p, p.getDifferential().getElement(), resource.getRoot(), resource.getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.None, true, null, null, false);
    List<String> names = new ArrayList<String>();
    names.addAll(resource.getSearchParams().keySet());
    Collections.sort(names);
    for (String pn : names) {
        pack.getSearchParameters().add(makeSearchParam(p, pack.getId() + "-" + resource.getName() + "-" + pn, resource.getName(), resource.getSearchParams().get(pn), resource));
    }
    StructureDefinition base = definitions.getSnapShotForBase(p.getBaseDefinition());
    List<String> errors = new ArrayList<String>();
    new ProfileUtilities(context, null, pkp).sortDifferential(base, p, p.getName(), errors, false);
    for (String s : errors) issues.add(new ValidationMessage(Source.ProfileValidator, IssueType.STRUCTURE, -1, -1, p.getUrl(), s, IssueSeverity.WARNING));
    reset();
    // ok, c is the differential. now we make the snapshot
    new ProfileUtilities(context, issues, pkp).generateSnapshot(base, p, "http://hl7.org/fhir/StructureDefinition/" + p.getType(), "http://hl7.org/fhir", p.getName());
    reset();
    p.getDifferential().getElement().get(0).getType().clear();
    p.getSnapshot().getElement().get(0).getType().clear();
    addElementConstraintToSnapshot(p);
    XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
    div.addText("to do");
    p.setText(new Narrative());
    p.getText().setStatus(NarrativeStatus.GENERATED);
    p.getText().setDiv(div);
    new ProfileUtilities(context, issues, pkp).setIds(p, false);
    checkHasTypes(p);
    return p;
}

Example 37 with ImplementationGuideDefn

use of org.hl7.fhir.definitions.model.ImplementationGuideDefn in project kindling by HL7.

the class PageProcessor method loadXmlNotes.

private String loadXmlNotes(String name, String suffix, boolean checkHeaders, String definition, StructureDefinition sd, List<String> tabs, ImplementationGuideDefn ig, WorkGroup wg) throws Exception {
    String filename;
    if (definitions.hasLogicalModel(name)) {
        LogicalModel lm = definitions.getLogicalModel(name);
        filename = Utilities.changeFileExt(lm.getSource(), "-" + suffix + ".xml");
    } else
        filename = folders.srcDir + name + File.separatorChar + name + "-" + suffix + ".xml";
    return loadXmlNotesFromFile(filename, checkHeaders, definition, null, tabs, ig, wg);
}

Example 38 with ImplementationGuideDefn

use of org.hl7.fhir.definitions.model.ImplementationGuideDefn in project kindling by HL7.

the class PageProcessor method produceRefExtensions.

private String produceRefExtensions(ResourceDefn resource) {
    int count = 0;
    Map<String, StructureDefinition> map = new HashMap<String, StructureDefinition>();
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) {
        boolean refers = false;
        for (ElementDefinition ed : sd.getSnapshot().getElement()) {
            for (TypeRefComponent tr : ed.getType()) {
                for (UriType u : tr.getTargetProfile()) if (u.getValue().endsWith("/" + resource.getName()))
                    refers = true;
            }
            if (refers)
                map.put(sd.getId(), sd);
        }
    }
    StringBuilder b = new StringBuilder();
    for (String s : sorted(map.keySet())) {
        StructureDefinition cs = map.get(s);
        count++;
        b.append("  <tr>\r\n");
        String ref = cs.getUserString("path");
        b.append("    <td><a href=\"").append(ref).append("\">").append(Utilities.escapeXml(cs.getId())).append("</a></td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(cs.getName())).append("</td>\r\n");
        Profile ap = (Profile) cs.getUserData("profile");
        if (ap == null)
            b.append("    <td></td>\r\n");
        else {
            ImplementationGuideDefn ig = definitions.getIgs().get(ap.getCategory());
            b.append("    <td>for <a href=\"" + ig.getPrefix() + ap.getId().toLowerCase() + ".html\">" + Utilities.escapeXml(ap.getTitle()) + "</a></td>\r\n");
        }
        b.append(" </tr>\r\n");
    }
    if (count == 0)
        b.append("<tr><td colspan=\"\3\">No Extensions refer to this resource</td></tr>");
    map.clear();
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) {
        boolean refers = false;
        for (ElementDefinition ed : sd.getSnapshot().getElement()) {
            for (TypeRefComponent tr : ed.getType()) {
                for (UriType u : tr.getTargetProfile()) if (u.getValue().endsWith("/Any") || u.getValue().endsWith("/Resource") || u.getValue().endsWith("/DomainResource"))
                    refers = true;
            }
            if (refers)
                map.put(sd.getId(), sd);
        }
    }
    b.append("<tr><td colspan=\"\3\">Extensions that refer to Any resource</td></tr>");
    for (String s : sorted(map.keySet())) {
        StructureDefinition cs = map.get(s);
        count++;
        b.append("  <tr>\r\n");
        String ref = cs.getUserString("path");
        b.append("    <td><a href=\"").append(ref).append("\">").append(Utilities.escapeXml(cs.getId())).append("</a></td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(cs.getName())).append("</td>\r\n");
        Profile ap = (Profile) cs.getUserData("profile");
        if (ap == null)
            b.append("    <td></td>\r\n");
        else {
            ImplementationGuideDefn ig = definitions.getIgs().get(ap.getCategory());
            b.append("    <td>for <a href=\"" + ig.getPrefix() + ap.getId() + ".html\">" + Utilities.escapeXml(ap.getTitle()) + "</a></td>\r\n");
        }
        b.append(" </tr>\r\n");
    }
    return b.toString();
}

Example 39 with ImplementationGuideDefn

use of org.hl7.fhir.definitions.model.ImplementationGuideDefn in project kindling by HL7.

the class PageProcessor method processConformancePackageIncludes.

public String processConformancePackageIncludes(Profile pack, String src, String intro, String notes, String resourceName, ImplementationGuideDefn ig) throws Exception {
    String workingTitle = null;
    int level = (ig == null || ig.isCore()) ? 0 : 1;
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = src.indexOf("%>");
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = src.indexOf("%]");
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String[] com = s2.split(" ");
        if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("settitle")) {
            workingTitle = s2.substring(9).replace("{", "<%").replace("}", "%>");
            src = s1 + s3;
        } else if (com[0].equals("setlevel")) {
            level = Integer.parseInt(com[1]);
            src = s1 + s3;
        } else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing profile " + pack.getId());
        else if (com[0].equals("pageheader"))
            src = s1 + pageHeader(pack.getId().toUpperCase().substring(0, 1) + pack.getId().substring(1)) + s3;
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + (workingTitle == null ? Utilities.escapeXml(pack.getTitle()) : workingTitle) + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + Utilities.escapeXml(pack.getId().toUpperCase().substring(0, 1) + pack.getId().substring(1)) + s3;
        else if (com[0].equals("name"))
            src = s1 + pack.getId() + s3;
        else if (com[0].equals("package.intro"))
            src = s1 + (intro == null ? pack.metadata("description") : intro) + s3;
        else if (com[0].equals("package.notes"))
            src = s1 + (notes == null ? "" : notes) + s3;
        else if (com[0].equals("canonicalname"))
            src = s1 + makeCanonical(pack.getId()) + s3;
        else if (com[0].equals("prettyname"))
            src = s1 + makePretty(pack.getId()) + s3;
        else if (com[0].equals("version"))
            src = s1 + version + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("maindiv"))
            src = s1 + "<div class=\"content\">" + s3;
        else if (com[0].equals("/maindiv"))
            src = s1 + "</div>" + s3;
        else if (com[0].equals("mappings-table"))
            src = s1 + genMappingsTable() + s3;
        else if (com[0].equals("id"))
            src = s1 + pack.getId() + s3;
        else if (com[0].equals("events"))
            src = s1 + getEventsTable(pack.getId()) + s3;
        else if (com[0].equals("resourcecodes"))
            src = s1 + genResCodes() + s3;
        else if (com[0].equals("datatypecodes"))
            src = s1 + genDTCodes() + s3;
        else if (com[0].equals("allparams"))
            src = s1 + allParamlist() + s3;
        else // src = s1 + genBindingsTable() + s3;
        if (com[0].equals("codeslist"))
            src = s1 + genCodeSystemsTable() + s3;
        else // src = s1 + genValueSetsTable() + s3;
        if (com[0].equals("igvaluesetslist"))
            src = s1 + genIGValueSetsTable() + s3;
        else if (com[0].equals("namespacelist"))
            src = s1 + genNSList() + s3;
        else if (com[0].equals("conceptmapslist"))
            src = s1 + genConceptMapsTable() + s3;
        else // src = s1 + genBindingTable(false) + s3;
        if (com[0].equals("resimplall"))
            src = s1 + genResImplList() + s3;
        else if (com[0].equals("breadcrumb"))
            src = s1 + breadCrumbManager.make(pack.getId()) + s3;
        else if (com[0].equals("navlist"))
            src = s1 + breadCrumbManager.navlist(pack.getId(), genlevel(level)) + s3;
        else if (com[0].equals("breadcrumblist"))
            src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(pack.getId(), "profile:" + resourceName + "/" + pack.getId(), genlevel(level), pack.getTitle()) : ig.makeList(pack.getId(), "profile:" + resourceName + "/" + pack.getId(), genlevel(level), pack.getTitle())) + s3;
        else if (com[0].equals("year"))
            src = s1 + new SimpleDateFormat("yyyy").format(new Date()) + s3;
        else if (com[0].equals("buildId"))
            src = s1 + buildId + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(level) + s3;
        else if (com[0].equals("pagepath"))
            src = s1 + pack.getId() + s3;
        else if (com[0].equals("rellink")) {
            if (pack.getId().contains(".html"))
                throw new Error("Invalid link: " + pack.getId() + " at " + workingTitle);
            src = s1 + Utilities.URLEncode(pack.getId() + ".html") + s3;
        } else if (com[0].equals("baseURL"))
            src = s1 + Utilities.URLEncode(baseURL) + s3;
        else if (com[0].equals("description"))
            src = s1 + Utilities.escapeXml(pack.getDescription()) + s3;
        else if (com[0].equals("package-content"))
            src = s1 + getPackageContent(pack, genlevel(level)) + s3;
        else if (com[0].equals("search-footer"))
            src = s1 + searchFooter(level) + s3;
        else if (com[0].equals("search-header"))
            src = s1 + searchHeader(level) + s3;
        else if (com[0].equals("package.search"))
            src = s1 + getSearch(pack) + s3;
        else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (com[0].equals("wg")) {
            String wg = pack.getWg();
            if (Utilities.noString(wg) && definitions.hasResource(resourceName))
                wg = definitions.getResourceByName(resourceName).getWg().getCode();
            if (wg == null || !definitions.getWorkgroups().containsKey(wg))
                src = s1 + "(No assigned work group) (" + wg + ") (4)" + s3;
            else
                src = s1 + "<a _target=\"blank\" href=\"" + definitions.getWorkgroups().get(wg).getUrl() + "\">" + definitions.getWorkgroups().get(wg).getName() + "</a> Work Group" + s3;
        } else if (com[0].equals("res-type-count")) {
            src = s1 + definitions.getResources().size() + s3;
        } else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing profile " + pack.getId());
    }
    return src;
}

Example 40 with ImplementationGuideDefn

use of org.hl7.fhir.definitions.model.ImplementationGuideDefn in project kindling by HL7.

the class PageProcessor method genProfilelist.

private String genProfilelist() throws Exception {
    StringBuilder b = new StringBuilder();
    b.append("<table class=\"grid\">\r\n");
    b.append("  <tr>\r\n");
    b.append("    <td><b>Name</b></td>\r\n");
    b.append("    <td><b>Description</b></td>\r\n");
    b.append("    <td><b>Kind</b></td>\r\n");
    b.append("    <td><b><a href=\"versions.html#Maturity\">FMM</a></b></td>");
    b.append("  </tr>\r\n");
    b.append("  <tr>\r\n");
    b.append("    <td colspan=\"2\"><b>General</b></td>\r\n");
    b.append("  </tr>\r\n");
    List<String> names = new ArrayList<String>();
    names.addAll(definitions.getPackMap().keySet());
    Collections.sort(names);
    for (String s : names) {
        Profile ap = definitions.getPackMap().get(s);
        ImplementationGuideDefn ig = definitions.getIgs().get(ap.getCategory());
        b.append("  <tr>\r\n");
        b.append("    <td><a href=\"").append(ig.getPrefix() + ap.getId().toLowerCase()).append(".html\">").append(Utilities.escapeXml(ap.getTitle())).append("</a></td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(ap.getDescription())).append("</td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(ap.describeKind())).append("</td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(ap.getFmmLevel())).append("</td>\r\n");
        b.append(" </tr>\r\n");
    }
    for (String n : definitions.sortedResourceNames()) {
        ResourceDefn r = definitions.getResourceByName(n);
        if (!r.getConformancePackages().isEmpty()) {
            b.append("  <tr>\r\n");
            b.append("    <td colspan=\"4\"><b>" + r.getName() + "</b></td>\r\n");
            b.append("  </tr>\r\n");
            for (Profile p : r.getConformancePackages()) {
                ImplementationGuideDefn ig = definitions.getIgs().get(p.getCategory());
                b.append("  <tr>\r\n");
                b.append("    <td><a href=\"" + ig.getPrefix() + p.getId().toLowerCase() + ".html\">" + Utilities.escapeXml(p.getTitle()) + "</a></td>\r\n");
                b.append("    <td>" + Utilities.escapeXml(p.getDescription()) + "</td>\r\n");
                b.append("    <td>" + Utilities.escapeXml(p.describeKind()) + "</td>\r\n");
                b.append("    <td>" + Utilities.escapeXml(p.getFmmLevel()) + "</td>\r\n");
                b.append(" </tr>\r\n");
            }
        }
    }
    b.append("</table>\r\n");
    return b.toString();
}