Examples with InstantType org.hl7.fhir.dstu2016may.model.InstantType used on opensource projects

Example 26 with InstantType

use of org.hl7.fhir.dstu2016may.model.InstantType in project kindling by HL7.

the class ProfileGenerator method generateElementDefinition.

private void generateElementDefinition(StructureDefinition source, ElementDefinition ed, ElementDefinition parent) throws Exception {
    String id = ed.getPath().replace("[x]", "X");
    if (id.length() > 64)
        id = id.substring(0, 64);
    if (!id.contains("."))
        // throw new Exception("Don't generate data element for root of resources or types");
        return;
    if (!ed.hasType())
        // throw new Exception("Don't generate data element for reference elements");
        return;
    if (Utilities.existsInList(ed.getType().get(0).getCode(), "Element", "BackboneElement"))
        // throw new Exception("Don't generate data element for elements that are not leaves");
        return;
    StructureDefinition de;
    if (des.containsKey(id)) {
        de = des.get("de-" + id);
        // do it again because we now have more information to generate with
        de.getSnapshot().getElement().clear();
        de.getExtension().clear();
    } else {
        de = new StructureDefinition();
        de.setId("de-" + id);
        des.put(id, de);
        de.setUrl("http://hl7.org/fhir/StructureDefinition/" + de.getId());
        if (de.getId().contains("."))
            definitions.addNs(de.getUrl(), "Data Element " + ed.getPath(), definitions.getSrcFile(id.substring(0, id.indexOf("."))) + "-definitions.html#" + id);
        if (dataElements != null)
            dataElements.addEntry().setResource(de).setFullUrl(de.getUrl());
    }
    if (!de.hasMeta())
        de.setMeta(new Meta());
    de.getMeta().setLastUpdatedElement(new InstantType(genDate));
    de.setVersion(version.toCode());
    de.setName(ed.getPath());
    de.setStatus(PublicationStatus.DRAFT);
    de.setExperimental(true);
    de.setTitle(de.getName());
    de.setDate(genDate.getTime());
    de.setPublisher("HL7 FHIR Standard");
    de.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    de.setDescription("Data Element for " + ed.getPath());
    de.setPurpose("Data Elements are defined for each element to assist in questionnaire construction etc");
    de.setFhirVersion(version);
    de.setKind(StructureDefinitionKind.LOGICAL);
    de.setType("DataElement");
    de.setAbstract(false);
    de.setType(de.getName());
    de.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Element");
    de.setDerivation(TypeDerivationRule.SPECIALIZATION);
    de.getMapping().addAll(source.getMapping());
    ElementDefinition ted = ed.copy();
    de.getSnapshot().addElement(ted);
    ted.makeBase();
}

Example 27 with InstantType

use of org.hl7.fhir.dstu2016may.model.InstantType in project kindling by HL7.

the class OldSpreadsheetParser method processValue.

private DataType processValue(Sheet sheet, int row, String column, String source, ElementDefn e) throws Exception {
    if (Utilities.noString(source))
        return null;
    if (e.getTypes().size() != 1)
        throw new Exception("Unable to process " + column + " unless a single type is specified (types = " + e.typeCode() + ") " + getLocation(row) + ", column = " + column);
    String type = e.typeCode();
    if (definitions != null) {
        if (definitions.getConstraints().containsKey(type))
            type = definitions.getConstraints().get(type).getBaseType();
    } else {
        StructureDefinition sd = context.fetchTypeDefinition(type);
        if (// not loaded yet?
        sd != null)
            type = sd.getType();
        if (type.equals("SimpleQuantity"))
            type = "Quantity";
    }
    if (source.startsWith("{")) {
        JsonParser json = new JsonParser();
        return json.parseType(source, type);
    } else if (source.startsWith("<")) {
        XmlParser xml = new XmlParser();
        return xml.parseType(source, type);
    } else {
        if (source.startsWith("\"") && source.endsWith("\""))
            source = source.substring(1, source.length() - 1);
        if (type.equals("string"))
            return new StringType(source);
        if (type.equals("boolean"))
            return new BooleanType(Boolean.valueOf(source));
        if (type.equals("integer"))
            return new IntegerType(Integer.valueOf(source));
        if (type.equals("integer64"))
            return new Integer64Type(Long.valueOf(source));
        if (type.equals("unsignedInt"))
            return new UnsignedIntType(Integer.valueOf(source));
        if (type.equals("positiveInt"))
            return new PositiveIntType(Integer.valueOf(source));
        if (type.equals("decimal"))
            return new DecimalType(new BigDecimal(source));
        if (type.equals("base64Binary"))
            return new Base64BinaryType(Base64.decode(source.toCharArray()));
        if (type.equals("instant"))
            return new InstantType(source);
        if (type.equals("uri"))
            return new UriType(source);
        if (type.equals("url"))
            return new UrlType(source);
        if (type.equals("canonical"))
            return new CanonicalType(source);
        if (type.equals("date"))
            return new DateType(source);
        if (type.equals("dateTime"))
            return new DateTimeType(source);
        if (type.equals("time"))
            return new TimeType(source);
        if (type.equals("code"))
            return new CodeType(source);
        if (type.equals("oid"))
            return new OidType(source);
        if (type.equals("uuid"))
            return new UuidType(source);
        if (type.equals("id"))
            return new IdType(source);
        if (type.startsWith("Reference(")) {
            Reference r = new Reference();
            r.setReference(source);
            return r;
        }
        if (type.equals("Period")) {
            if (source.contains("->")) {
                String[] parts = source.split("\\-\\>");
                Period p = new Period();
                p.setStartElement(new DateTimeType(parts[0].trim()));
                if (parts.length > 1)
                    p.setEndElement(new DateTimeType(parts[1].trim()));
                return p;
            } else
                throw new Exception("format not understood parsing " + source + " into a period");
        }
        if (type.equals("CodeableConcept")) {
            CodeableConcept cc = new CodeableConcept();
            if (source.contains(":")) {
                String[] parts = source.split("\\:");
                String system = "";
                if (parts[0].equalsIgnoreCase("SCT"))
                    system = "http://snomed.info/sct";
                else if (parts[0].equalsIgnoreCase("LOINC"))
                    system = "http://loinc.org";
                else if (parts[0].equalsIgnoreCase("AMTv2"))
                    system = "http://nehta.gov.au/amtv2";
                else
                    system = "http://hl7.org/fhir/" + parts[0];
                String code = parts[1];
                String display = parts.length > 2 ? parts[2] : null;
                cc.addCoding().setSystem(system).setCode(code).setDisplay(display);
            } else
                throw new Exception("format not understood parsing " + source + " into a codeable concept");
            return cc;
        }
        if (type.equals("Identifier")) {
            Identifier id = new Identifier();
            id.setSystem("urn:ietf:rfc:3986");
            id.setValue(source);
            return id;
        }
        if (type.equals("Quantity")) {
            int s = 0;
            if (source.startsWith("<=") || source.startsWith("=>"))
                s = 2;
            else if (source.startsWith("<") || source.startsWith(">"))
                s = 1;
            int i = s;
            while (i < source.length() && Character.isDigit(source.charAt(i))) i++;
            Quantity q = new Quantity();
            if (s > 0)
                q.setComparator(QuantityComparator.fromCode(source.substring(0, s)));
            if (i > s)
                q.setValue(new BigDecimal(source.substring(s, i)));
            if (i < source.length())
                q.setUnit(source.substring(i).trim());
            return q;
        }
        throw new Exception("Unable to process primitive value '" + source + "' provided for " + column + " - unhandled type " + type + " @ " + getLocation(row));
    }
}

Example 28 with InstantType

use of org.hl7.fhir.dstu2016may.model.InstantType in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method displayLeaf.

private boolean displayLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, String name, boolean showCodeDetails) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return false;
    Base e = ew.getBase();
    Map<String, String> displayHints = readDisplayHints(defn);
    if (name.endsWith("[x]"))
        name = name.substring(0, name.length() - 3);
    if (!showCodeDetails && e instanceof PrimitiveType && isDefault(displayHints, ((PrimitiveType) e)))
        return false;
    if (e instanceof StringType) {
        x.addText(name + ": " + ((StringType) e).getValue());
        return true;
    } else if (e instanceof CodeType) {
        x.addText(name + ": " + ((CodeType) e).getValue());
        return true;
    } else if (e instanceof IdType) {
        x.addText(name + ": " + ((IdType) e).getValue());
        return true;
    } else if (e instanceof DateTimeType) {
        x.addText(name + ": " + ((DateTimeType) e).toHumanDisplay());
        return true;
    } else if (e instanceof InstantType) {
        x.addText(name + ": " + ((InstantType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Extension) {
        x.addText("Extensions: todo");
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DateType) {
        x.addText(name + ": " + ((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Enumeration) {
        // todo: look up a display name if there is one
        x.addText(((Enumeration<?>) e).getValue().toString());
        return true;
    } else if (e instanceof BooleanType) {
        if (((BooleanType) e).getValue()) {
            x.addText(name);
            return true;
        }
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x, showCodeDetails);
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
        return true;
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
        return true;
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
        return true;
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
        return true;
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
        return true;
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
        return true;
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
        return true;
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
        return true;
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(name + ": ");
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
        return true;
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.hasDisplayElement())
            x.addText(r.getDisplay());
        else if (r.hasReferenceElement()) {
            ResourceWithReference tr = resolveReference(res, r.getReference());
            // getDisplayForReference(tr.getReference()));
            x.addText(tr == null ? r.getReference() : "????");
        } else
            x.addText("??");
        return true;
    } else if (e instanceof Narrative) {
        return false;
    } else if (e instanceof Resource) {
        return false;
    } else if (!(e instanceof Attachment))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
    return false;
}

Example 29 with InstantType

use of org.hl7.fhir.dstu2016may.model.InstantType in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method checkPrimitive.

private void checkPrimitive(ValidatorHostContext hostContext, List<ValidationMessage> errors, String path, String type, ElementDefinition context, Element e, StructureDefinition profile, NodeStack node) throws FHIRException {
    if (isBlank(e.primitiveValue())) {
        if (e.primitiveValue() == null)
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.hasChildren(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_VALUEEXT);
        else if (e.primitiveValue().length() == 0)
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.hasChildren(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_NOTEMPTY);
        else if (StringUtils.isWhitespace(e.primitiveValue()))
            warning(errors, IssueType.INVALID, e.line(), e.col(), path, e.hasChildren(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_WS);
        if (context.hasBinding()) {
            rule(errors, IssueType.CODEINVALID, e.line(), e.col(), path, context.getBinding().getStrength() != BindingStrength.REQUIRED, I18nConstants.Terminology_TX_Code_ValueSet_MISSING);
        }
        return;
    } else {
        boolean hasBiDiControls = UnicodeUtilities.hasBiDiChars(e.primitiveValue());
        if (hasBiDiControls) {
            if (rule(errors, IssueType.CODEINVALID, e.line(), e.col(), path, !noUnicodeBiDiControlChars, I18nConstants.UNICODE_BIDI_CONTROLS_CHARS_DISALLOWED, UnicodeUtilities.replaceBiDiChars(e.primitiveValue()))) {
                String msg = UnicodeUtilities.checkUnicodeWellFormed(e.primitiveValue());
                warning(errors, IssueType.INVALID, e.line(), e.col(), path, msg == null, I18nConstants.UNICODE_BIDI_CONTROLS_CHARS_MATCH, msg);
            }
        }
    }
    String regex = context.getExtensionString(ToolingExtensions.EXT_REGEX);
    // ( see task 13328) it might also be found on one the types
    if (regex != null) {
        for (TypeRefComponent tr : context.getType()) {
            if (tr.hasExtension(ToolingExtensions.EXT_REGEX)) {
                regex = tr.getExtensionString(ToolingExtensions.EXT_REGEX);
                break;
            }
        }
    }
    if (regex != null) {
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().matches(regex), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_REGEX, e.primitiveValue(), regex);
    }
    if (!"xhtml".equals(type)) {
        if (securityChecks) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, !containsHtmlTags(e.primitiveValue()), I18nConstants.SECURITY_STRING_CONTENT_ERROR);
        } else {
            hint(errors, IssueType.INVALID, e.line(), e.col(), path, !containsHtmlTags(e.primitiveValue()), I18nConstants.SECURITY_STRING_CONTENT_WARNING);
        }
    }
    if (type.equals("boolean")) {
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, "true".equals(e.primitiveValue()) || "false".equals(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_BOOLEAN_VALUE);
    }
    if (type.equals("uri") || type.equals("oid") || type.equals("uuid") || type.equals("url") || type.equals("canonical")) {
        String url = e.primitiveValue();
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !url.startsWith("oid:"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_URI_OID);
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !url.startsWith("uuid:"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_URI_UUID);
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, url.equals(url.trim().replace(" ", "")) || // work around an old invalid example in a core package
        "http://www.acme.com/identifiers/patient or urn:ietf:rfc:3986 if the Identifier.value itself is a full uri".equals(url), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_URI_WS, url);
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || url.length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || e.primitiveValue().length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
        if (type.equals("oid")) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, url.startsWith("urn:oid:"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_OID_START);
        }
        if (type.equals("uuid")) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, url.startsWith("urn:uuid:"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_UUID_STRAT);
        }
        if (type.equals("canonical")) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, url.startsWith("#") || Utilities.isAbsoluteUrl(url), I18nConstants.TYPE_SPECIFIC_CHECKS_CANONICAL_ABSOLUTE, url);
        }
        if (url != null && url.startsWith("urn:uuid:")) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, Utilities.isValidUUID(url.substring(9)), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_UUID_VALID);
        }
        if (url != null && url.startsWith("urn:oid:")) {
            String cc = url.substring(8);
            // OIDs shorter than 5 chars are almost never valid for namespaces, except for the special OID 1.3.88
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, Utilities.isOid(cc) && (cc.lastIndexOf('.') >= 5 || "1.3.88".equals(cc)), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_OID_VALID, cc);
        }
        if (isCanonicalURLElement(e)) {
            // we get to here if this is a defining canonical URL (e.g. CodeSystem.url)
            // the URL must be an IRI if present
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, Utilities.isAbsoluteUrl(url), node.isContained() ? I18nConstants.TYPE_SPECIFIC_CHECKS_CANONICAL_CONTAINED : I18nConstants.TYPE_SPECIFIC_CHECKS_CANONICAL_ABSOLUTE, url);
        } else if (!e.getProperty().getDefinition().getPath().equals("Bundle.entry.fullUrl")) {
            // we don't check fullUrl here; it's not a reference, it's a definition. It'll get checked as part of checking the bundle
            validateReference(hostContext, errors, path, type, context, e, url);
        }
    }
    if (type.equals(ID) && !"Resource.id".equals(context.getBase().getPath())) {
        // work around an old issue with ElementDefinition.id
        if (!context.getPath().equals("ElementDefinition.id")) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.isValidId(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_ID_VALID, e.primitiveValue());
        }
    }
    if (type.equalsIgnoreCase("string") && e.hasPrimitiveValue()) {
        if (rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue() == null || e.primitiveValue().length() > 0, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_NOTEMPTY)) {
            warning(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue() == null || e.primitiveValue().trim().equals(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_STRING_WS, prepWSPresentation(e.primitiveValue()));
            if (rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().length() <= 1048576, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_STRING_LENGTH)) {
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || e.primitiveValue().length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
            }
        }
    }
    if (type.equals("dateTime")) {
        warning(errors, IssueType.INVALID, e.line(), e.col(), path, yearIsValid(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_REASONABLE, e.primitiveValue());
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().matches("([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]+)?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00))?)?)?)?"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_VALID, e.primitiveValue());
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !hasTime(e.primitiveValue()) || hasTimeZone(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_TZ);
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || e.primitiveValue().length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
        try {
            DateTimeType dt = new DateTimeType(e.primitiveValue());
        } catch (Exception ex) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, false, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_VALID, ex.getMessage());
        }
    }
    if (type.equals("time")) {
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().matches("([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_TIME_VALID);
        try {
            TimeType dt = new TimeType(e.primitiveValue());
        } catch (Exception ex) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, false, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_TIME_VALID, ex.getMessage());
        }
    }
    if (type.equals("date")) {
        warning(errors, IssueType.INVALID, e.line(), e.col(), path, yearIsValid(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_REASONABLE, e.primitiveValue());
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().matches("([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1]))?)?"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATE_VALID);
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || e.primitiveValue().length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
        try {
            DateType dt = new DateType(e.primitiveValue());
        } catch (Exception ex) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, false, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATE_VALID, ex.getMessage());
        }
    }
    if (type.equals("base64Binary")) {
        String encoded = e.primitiveValue();
        if (isNotBlank(encoded)) {
            boolean ok = isValidBase64(encoded);
            if (!ok) {
                String value = encoded.length() < 100 ? encoded : "(snip)";
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, false, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_BASE64_VALID, value);
            } else {
                boolean wsok = !base64HasWhitespace(encoded);
                if (VersionUtilities.isR5VerOrLater(this.context.getVersion())) {
                    rule(errors, IssueType.INVALID, e.line(), e.col(), path, wsok, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_BASE64_NO_WS_ERROR);
                } else {
                    warning(errors, IssueType.INVALID, e.line(), e.col(), path, wsok, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_BASE64_NO_WS_WARNING);
                }
            }
            if (ok && context.hasExtension("http://hl7.org/fhir/StructureDefinition/maxSize")) {
                int size = countBase64DecodedBytes(encoded);
                long def = Long.parseLong(ToolingExtensions.readStringExtension(context, "http://hl7.org/fhir/StructureDefinition/maxSize"));
                rule(errors, IssueType.STRUCTURE, e.line(), e.col(), path, size <= def, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_BASE64_TOO_LONG, size, def);
            }
        }
    }
    if (type.equals("integer") || type.equals("unsignedInt") || type.equals("positiveInt")) {
        if (rule(errors, IssueType.INVALID, e.line(), e.col(), path, Utilities.isInteger(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_VALID, e.primitiveValue())) {
            Integer v = new Integer(e.getValue()).intValue();
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxValueIntegerType() || !context.getMaxValueIntegerType().hasValue() || (context.getMaxValueIntegerType().getValue() >= v), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_GT, (context.hasMaxValueIntegerType() ? context.getMaxValueIntegerType() : ""));
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMinValueIntegerType() || !context.getMinValueIntegerType().hasValue() || (context.getMinValueIntegerType().getValue() <= v), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT, (context.hasMinValueIntegerType() ? context.getMinValueIntegerType() : ""));
            if (type.equals("unsignedInt"))
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, v >= 0, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT0);
            if (type.equals("positiveInt"))
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, v > 0, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT1);
        }
    }
    if (type.equals("integer64")) {
        if (rule(errors, IssueType.INVALID, e.line(), e.col(), path, Utilities.isLong(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER64_VALID, e.primitiveValue())) {
            Long v = new Long(e.getValue()).longValue();
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxValueInteger64Type() || !context.getMaxValueInteger64Type().hasValue() || (context.getMaxValueInteger64Type().getValue() >= v), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_GT, (context.hasMaxValueInteger64Type() ? context.getMaxValueInteger64Type() : ""));
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMinValueInteger64Type() || !context.getMinValueInteger64Type().hasValue() || (context.getMinValueInteger64Type().getValue() <= v), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT, (context.hasMinValueInteger64Type() ? context.getMinValueInteger64Type() : ""));
            if (type.equals("unsignedInt"))
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, v >= 0, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT0);
            if (type.equals("positiveInt"))
                rule(errors, IssueType.INVALID, e.line(), e.col(), path, v > 0, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INTEGER_LT1);
        }
    }
    if (type.equals("decimal")) {
        if (e.primitiveValue() != null) {
            DecimalStatus ds = Utilities.checkDecimal(e.primitiveValue(), true, false);
            if (rule(errors, IssueType.INVALID, e.line(), e.col(), path, ds == DecimalStatus.OK || ds == DecimalStatus.RANGE, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DECIMAL_VALID, e.primitiveValue())) {
                warning(errors, IssueType.VALUE, e.line(), e.col(), path, ds != DecimalStatus.RANGE, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DECIMAL_RANGE, e.primitiveValue());
                try {
                    Decimal v = new Decimal(e.getValue());
                    rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxValueIntegerType() || !context.getMaxValueIntegerType().hasValue() || checkDecimalMaxValue(v, context.getMaxValueDecimalType().getValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DECIMAL_GT, (context.hasMaxValueIntegerType() ? context.getMaxValueIntegerType() : ""));
                    rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMinValueIntegerType() || !context.getMinValueIntegerType().hasValue() || checkDecimalMinValue(v, context.getMaxValueDecimalType().getValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DECIMAL_LT, (context.hasMinValueIntegerType() ? context.getMinValueIntegerType() : ""));
                } catch (Exception ex) {
                // should never happen?
                }
            }
        }
        if (context.hasExtension("http://hl7.org/fhir/StructureDefinition/maxDecimalPlaces")) {
            int dp = e.primitiveValue().contains(".") ? e.primitiveValue().substring(e.primitiveValue().indexOf(".") + 1).length() : 0;
            int def = Integer.parseInt(ToolingExtensions.readStringExtension(context, "http://hl7.org/fhir/StructureDefinition/maxDecimalPlaces"));
            rule(errors, IssueType.STRUCTURE, e.line(), e.col(), path, dp <= def, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DECIMAL_CHARS, dp, def);
        }
    }
    if (type.equals("instant")) {
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, e.primitiveValue().matches("-?[0-9]{4}-(0[1-9]|1[0-2])-(0[1-9]|[1-2][0-9]|3[0-1])T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]+)?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00))"), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_REGEX, e.primitiveValue());
        warning(errors, IssueType.INVALID, e.line(), e.col(), path, yearIsValid(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_DATETIME_REASONABLE, e.primitiveValue());
        try {
            InstantType dt = new InstantType(e.primitiveValue());
        } catch (Exception ex) {
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, false, I18nConstants.TYPE_SPECIFIC_CHECKS_DT_INSTANT_VALID, ex.getMessage());
        }
    }
    if (type.equals("code") && e.primitiveValue() != null) {
        // Technically, a code is restricted to string which has at least one character and no leading or trailing whitespace, and where there is no whitespace
        // other than single spaces in the contents
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, passesCodeWhitespaceRules(e.primitiveValue()), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_CODE_WS, e.primitiveValue());
        rule(errors, IssueType.INVALID, e.line(), e.col(), path, !context.hasMaxLength() || context.getMaxLength() == 0 || e.primitiveValue().length() <= context.getMaxLength(), I18nConstants.TYPE_SPECIFIC_CHECKS_DT_PRIMITIVE_LENGTH, context.getMaxLength());
    }
    if (context.hasBinding() && e.primitiveValue() != null) {
        checkPrimitiveBinding(hostContext, errors, path, type, context, e, profile, node);
    }
    if (type.equals("xhtml")) {
        XhtmlNode xhtml = e.getXhtml();
        if (xhtml != null) {
            // if it is null, this is an error already noted in the parsers
            // check that the namespace is there and correct.
            String ns = xhtml.getNsDecl();
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, FormatUtilities.XHTML_NS.equals(ns), I18nConstants.XHTML_XHTML_NS_INVALID, ns, FormatUtilities.XHTML_NS);
            // check that inner namespaces are all correct
            checkInnerNS(errors, e, path, xhtml.getChildNodes());
            rule(errors, IssueType.INVALID, e.line(), e.col(), path, "div".equals(xhtml.getName()), I18nConstants.XHTML_XHTML_NAME_INVALID, ns);
            // check that no illegal elements and attributes have been used
            checkInnerNames(errors, e, path, xhtml.getChildNodes(), false);
            checkUrls(errors, e, path, xhtml.getChildNodes());
        }
    }
    if (context.hasFixed()) {
        checkFixedValue(errors, path, e, context.getFixed(), profile.getUrl(), context.getSliceName(), null, false);
    }
    if (context.hasPattern()) {
        checkFixedValue(errors, path, e, context.getPattern(), profile.getUrl(), context.getSliceName(), null, true);
    }
// for nothing to check
}

Example 30 with InstantType

use of org.hl7.fhir.dstu2016may.model.InstantType in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent, ResourceContext rc) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        if (e.hasPrimitiveValue())
            x.addText(((DateTimeType) e).toHumanDisplay());
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r4.model.DateType)
        x.addText(((org.hl7.fhir.r4.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.r4.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.r4.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.r4.model.DecimalType) {
        x.addText(((org.hl7.fhir.r4.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x, defn.getPath(), rc != null && rc.resourceResource != null ? rc.resourceResource.getId() : null);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference(), rc);
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"), rc);
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"), rc);
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails, indent + 1, rc);
    }
}