use of org.hl7.fhir.dstu3.model.MeasureReport in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_populations_supplemental_data.
@Test
public void in_populations_supplemental_data() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = setupDefineReturnLibrary();
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
measure.setSupplementalData(Arrays.asList(createSupplementalDataComponent("SDE Sex", MeasureSupplementalDataEvaluation.SDE_SEX)));
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions());
assertNotNull(report);
// EvaluatedResource should contain a reference to an observation record created for supplemental data, despite the evidence options indicating returning no evaluatedResources
assertEquals(1, report.getEvaluatedResource().size());
// See MeasureSupplementalDataEvaluationTest for more details on what is returned here
}
use of org.hl7.fhir.dstu3.model.MeasureReport in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.
@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
Map<String, Type> measureParameters = new HashMap<>();
measureParameters.put("base64Param", new Base64BinaryType("AAA"));
measureParameters.put("booleanParam", new BooleanType(false));
measureParameters.put("dateParam", new DateType("2020-01-01"));
measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
measureParameters.put("decimalParam", new DecimalType(12.0));
measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
measureParameters.put("integerParam", new IntegerType(1));
measureParameters.put("stringParam", new StringType("str"));
measureParameters.put("timeParam", new TimeType("05:30:00"));
measureParameters.put("uriParam", new UriType("abcde"));
measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
measure.setExtension(parameterExtensions);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
assertNotNull(report);
List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
// Expected parameters are the ones listed above, plus the special parameters
// measurement period and product line
assertEquals(measureParameters.size() + 2, parameterNames.size());
assertTrue(parameterNames.containsAll(measureParameters.keySet()));
assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
use of org.hl7.fhir.dstu3.model.MeasureReport in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_populations_defines_returned.
@Test
public void in_populations_defines_returned() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
// Add 2 names to test list
HumanName name1 = new HumanName();
name1.setFamily("Jones");
HumanName name2 = new HumanName();
name2.setFamily("Smith");
patient.setName(Arrays.asList(name1, name2));
// Add marital status to test codeable concept
CodeableConcept maritalStatus = new CodeableConcept();
Coding maritalCoding = new Coding();
maritalCoding.setCode("M");
maritalCoding.setSystem("http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
maritalCoding.setDisplay("Married");
maritalStatus.setCoding(Arrays.asList(maritalCoding));
maritalStatus.setText("Married");
patient.setMaritalStatus(maritalStatus);
mockFhirResourceRetrieval(patient);
Library library = setupDefineReturnLibrary();
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null, new MeasureEvidenceOptions(true, DefineReturnOptions.ALL));
assertNotNull(report);
assertFalse(report.getEvaluatedResource().isEmpty());
List<Extension> returnedExtensions = report.getExtensionsByUrl(CDMConstants.EVIDENCE_URL);
assertFalse(returnedExtensions.isEmpty());
assertEquals(30, returnedExtensions.size());
}
use of org.hl7.fhir.dstu3.model.MeasureReport in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method in_initial_population_denominator_and_nothing_else___proportion_evaluated_correctly.
@Test
public void in_initial_population_denominator_and_nothing_else___proportion_evaluated_correctly() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.cql");
expressionsByPopulationType.clear();
expressionsByPopulationType.put(MeasurePopulationType.INITIALPOPULATION, INITIAL_POPULATION);
expressionsByPopulationType.put(MeasurePopulationType.DENOMINATOR, DENOMINATOR);
expressionsByPopulationType.put(MeasurePopulationType.NUMERATOR, NUMERATOR);
Measure measure = getProportionMeasure("ProportionMeasureName", library, expressionsByPopulationType);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
assertNotNull(report);
assertEquals(expressionsByPopulationType.size(), report.getGroupFirstRep().getPopulation().size());
for (MeasureReport.MeasureReportGroupPopulationComponent pop : report.getGroupFirstRep().getPopulation()) {
MeasurePopulationType type = MeasurePopulationType.fromCode(pop.getCode().getCodingFirstRep().getCode());
switch(type) {
case INITIALPOPULATION:
assertEquals(1, pop.getCount());
break;
case DENOMINATOR:
assertEquals(1, pop.getCount());
break;
case NUMERATOR:
assertEquals(0, pop.getCount());
break;
default:
fail("Unexpected population type in result");
}
}
}
use of org.hl7.fhir.dstu3.model.MeasureReport in project quality-measure-and-cohort-service by Alvearie.
the class MeasureEvaluatorTest method elm_in_initial_population___cohort_evaluated_correctly.
@Test
public void elm_in_initial_population___cohort_evaluated_correctly() throws Exception {
CapabilityStatement metadata = getCapabilityStatement();
mockFhirResourceRetrieval("/metadata?_format=json", metadata);
Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
mockFhirResourceRetrieval(patient);
Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
mockFhirResourceRetrieval(measure);
MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
assertNotNull(report);
assertEquals(1, report.getGroupFirstRep().getPopulationFirstRep().getCount());
verify(1, getRequestedFor(urlEqualTo("/Patient/123?_format=json")));
// These ensure that the cache is working
verify(1, getRequestedFor(urlMatching("/Library\\?url=http.*&_format=json")));
verify(1, getRequestedFor(urlEqualTo("/Library?name%3Aexact=" + library.getName() + "&version=1.0.0&_format=json")));
}
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