Examples with Device org.hl7.fhir.r4.model.Device used on opensource projects

Example 81 with Device

use of org.hl7.fhir.r4.model.Device in project CRD by HL7-DaVinci.

the class PrefetchHydrator method hydrate.

/**
 * Attempt to hydrate missing prefetch elements, note that this modifies the request object.
 */
public void hydrate() {
    Object crdResponse = cdsRequest.getPrefetch();
    for (PrefetchTemplateElement prefetchElement : cdsService.getPrefetchElements()) {
        String prefetchKey = prefetchElement.getKey();
        // check if the prefetch has already been populated with that key
        Boolean alreadyIncluded = false;
        try {
            alreadyIncluded = (PropertyUtils.getProperty(crdResponse, prefetchKey) != null);
        } catch (Exception e) {
            throw new RuntimeException("System error: Mismatch in prefetch keys between the " + "CrdPrefetch and the key templates set in the service.", e);
        }
        if (!alreadyIncluded) {
            // check if the bundle actually has element
            String prefetchQuery = cdsService.prefetch.get(prefetchKey);
            String hydratedPrefetchQuery = hydratePrefetchQuery(prefetchQuery);
            // e.g. this could be a query template for a medication order but we have a device request
            if (hydratedPrefetchQuery != null) {
                if (cdsRequest.getFhirServer() == null) {
                    throw new FatalRequestIncompleteException("Attempting to fill the prefetch, but no fhir " + "server provided. Either provide a full prefetch or provide a fhir server.");
                }
                try {
                    PropertyUtils.setProperty(crdResponse, prefetchKey, prefetchElement.getReturnType().cast(FhirRequestProcessor.executeFhirQueryUrl(hydratedPrefetchQuery, cdsRequest, fhirComponents, HttpMethod.GET)));
                } catch (Exception e) {
                    logger.warn("Failed to fill prefetch for key: " + prefetchKey, e);
                }
            }
        }
    }
}

Example 82 with Device

use of org.hl7.fhir.r4.model.Device in project CRD by HL7-DaVinci.

the class CoverageRequirementsDiscoveryOperationHardCodedResponse method coverageRequirementsDiscovery.

/**
 * Submits the CRD request.
 * @param request the request to be submitted
 * @param endpoint the endpoint to submit the request to
 * @param requestQualification what kind of request it is
 * @return the parameters returned from the server
 */
@Operation(name = "$coverage-requirements-discovery", idempotent = true)
public Parameters coverageRequirementsDiscovery(@OperationParam(name = "request") Parameters.ParametersParameterComponent request, @OperationParam(name = "endpoint") Endpoint endpoint, @OperationParam(name = "requestQualification") CodeableConcept requestQualification) {
    logger.debug("coverageRequirementsDiscovery: start");
    Parameters retVal = new Parameters();
    CoverageEligibilityRequest eligibilityRequest = null;
    Patient patient = null;
    Coverage coverage = null;
    Practitioner provider = null;
    Organization insurer = null;
    Location facility = null;
    // supportingInformation
    // serviceInformation
    // grab the list of parameters
    List<Parameters.ParametersParameterComponent> paramList = request.getPart();
    // pull each of the parameters from the list
    for (Parameters.ParametersParameterComponent part : paramList) {
        System.out.println(part.getName());
        switch(part.getName()) {
            case "eligibilityrequest":
                logger.debug("CRD: got eligibilityrequest");
                eligibilityRequest = (CoverageEligibilityRequest) part.getResource();
                break;
            case "patient":
                logger.debug("CRD: got patient");
                patient = (Patient) part.getResource();
                break;
            case "coverage":
                logger.debug("CRD: got coverage");
                coverage = (Coverage) part.getResource();
                break;
            case "provider":
                logger.debug("CRD: got provider");
                provider = (Practitioner) part.getResource();
                break;
            case "insurer":
                logger.debug("CRD: got insurer");
                insurer = (Organization) part.getResource();
                break;
            case "facility":
                logger.debug("CRD: got facility");
                facility = (Location) part.getResource();
                break;
            case "patientContext":
                ResourceType patientContextType = part.getResource().getResourceType();
                switch(patientContextType) {
                    case Condition:
                        logger.debug("CRD: got request.patientContext of type Condition");
                        break;
                    case Device:
                        logger.debug("CRD: got request.patientContext of type Device");
                        break;
                    case Procedure:
                        logger.debug("CRD: got request.patientContext of type Procedure");
                        break;
                    case MedicationStatement:
                        logger.debug("CRD: got request.patientContext of type MedicationStatement");
                        break;
                    case HealthcareService:
                        logger.debug("CRD: got request.patientContext of type HealthcareService");
                        break;
                    default:
                        logger.warn("Warning: unexpected request.patientContext type");
                        break;
                }
                break;
            case "serviceInformationReference":
                ResourceType serviceInformationReferenceType = part.getResource().getResourceType();
                switch(serviceInformationReferenceType) {
                    case Procedure:
                        logger.debug("CRD: got request.serviceInformationReferenceType of type Procedure");
                        break;
                    case HealthcareService:
                        logger.debug("CRD: got request.serviceInformationReferenceType " + "of type HealthcareService");
                        break;
                    case ServiceRequest:
                        logger.debug("CRD: got request.serviceInformationReferenceType " + "of type ServiceRequest");
                        break;
                    case MedicationRequest:
                        logger.debug("CRD: got request.serviceInformationReferenceType " + "of type MedicationRequest");
                        break;
                    case Medication:
                        logger.debug("CRD: got request.serviceInformationReferenceType of type Medication");
                        break;
                    case Device:
                        logger.debug("CRD: got request.serviceInformationReferenceType of type Device");
                        break;
                    case DeviceRequest:
                        logger.debug("CRD: got request.serviceInformationReferenceType " + "of type DeviceRequest");
                        break;
                    default:
                        logger.warn("Warning: unexpected request.serviceInformationReferenceType type");
                        break;
                }
                break;
            default:
                logger.warn("Warning: unexpected parameter part: " + part.getName());
                break;
        }
    }
    // Note: if nothing is set in the reference (even if it was created) it will be null
    if (nullCheck(eligibilityRequest, "eligibilityrequest") || nullCheck(patient, "patient") || nullCheck(coverage, "coverage") || nullCheck(provider, "provider") || nullCheck(insurer, "insurer")) {
        logger.error("ERROR: required information missing!");
        return retVal;
    }
    // print out the patient name
    assert patient != null;
    if (patient.hasName()) {
        logger.debug("CRD: Patient Name: " + patient.getName().get(0).getText());
    } else {
        logger.debug("CRD: No Patient Name provided");
    }
    // start building the response
    CoverageEligibilityResponse eligibilityResponse = new CoverageEligibilityResponse();
    eligibilityResponse.setDisposition("this is a test");
    Endpoint finalEndPoint = new Endpoint();
    finalEndPoint.setAddress("http://www.mitre.org");
    Parameters.ParametersParameterComponent response = retVal.addParameter();
    response.setName("response");
    response.addPart().setName("eligibilityresponse").setResource(eligibilityResponse);
    response.addPart().setName("requestProvider").setResource(provider);
    response.addPart().setName("request").setResource(eligibilityRequest);
    response.addPart().setName("insurer").setResource(insurer);
    response.addPart().setName("coverage").setResource(coverage);
    // add a few service resources to the parameters
    Procedure procedure = new Procedure();
    procedure.setId("procedure-1");
    Device device = new Device();
    device.setModelNumber("LMNOP678");
    response.addPart().setName("service").setResource(procedure);
    response.addPart().setName("service").setResource(device);
    if (finalEndPoint != null) {
        response.addPart().setName("endPoint").setResource(finalEndPoint);
    }
    logger.debug("coverageRequirementsDiscovery: end");
    return retVal;
}

Example 83 with Device

use of org.hl7.fhir.r4.model.Device in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentReference.

/**
 * ITI-65: process DocumentReference resource from Bundle
 * @param reference
 * @param entry
 */
public void processDocumentReference(DocumentReference reference, DocumentEntry entry) {
    if (reference.getIdElement() != null) {
        entry.setEntryUuid(reference.getIdElement().getIdPart());
    } else {
        entry.assignEntryUuid();
        reference.setId(entry.getEntryUuid());
    }
    Identifier masterIdentifier = reference.getMasterIdentifier();
    entry.setUniqueId(noPrefix(masterIdentifier.getValue()));
    // limitedMetadata -> meta.profile canonical [0..*]
    // No action
    // availabilityStatus -> status code {DocumentReferenceStatus} [1..1]
    // approved -> status=current
    // deprecated -> status=superseded
    // Other status values are allowed but are not defined in this mapping to XDS.
    DocumentReferenceStatus status = reference.getStatus();
    switch(status) {
        case CURRENT:
            entry.setAvailabilityStatus(AvailabilityStatus.APPROVED);
            break;
        case SUPERSEDED:
            entry.setAvailabilityStatus(AvailabilityStatus.DEPRECATED);
            break;
        default:
            throw new InvalidRequestException("Unknown document status");
    }
    // contentTypeCode -> type CodeableConcept [0..1]
    CodeableConcept type = reference.getType();
    entry.setTypeCode(transform(type));
    // classCode -> category CodeableConcept [0..*]
    List<CodeableConcept> category = reference.getCategory();
    entry.setClassCode(transform(category));
    // patientId -> subject Reference(Patient| Practitioner| Group| Device) [0..1],
    Reference subject = reference.getSubject();
    entry.setPatientId(transformReferenceToIdentifiable(subject, reference));
    // creationTime -> date instant [0..1]
    entry.setCreationTime(timestampFromDate(reference.getDateElement()));
    // PractitionerRole| Organization| Device| Patient| RelatedPerson) [0..*]
    for (Reference authorRef : reference.getAuthor()) {
        entry.getAuthors().add(transformAuthor(authorRef, reference.getContained(), null));
    }
    if (reference.hasAuthenticator()) {
        Reference authenticatorRef = reference.getAuthenticator();
        Resource authenticator = findResource(authenticatorRef, reference.getContained());
        if (authenticator instanceof Practitioner) {
            entry.setLegalAuthenticator(transform((Practitioner) authenticator));
        } else if (authenticator instanceof PractitionerRole) {
            Practitioner practitioner = (Practitioner) findResource(((PractitionerRole) authenticator).getPractitioner(), reference.getContained());
            if (practitioner != null)
                entry.setLegalAuthenticator(transform(practitioner));
        } else
            throw new InvalidRequestException("No authenticator of type Organization supported.");
    }
    // title -> description string [0..1]
    String title = reference.getDescription();
    if (title != null)
        entry.setTitle(localizedString(title));
    // confidentialityCode -> securityLabel CodeableConcept [0..*] Note: This
    // is NOT the DocumentReference.meta, as that holds the meta tags for the
    // DocumentReference itself.
    List<CodeableConcept> securityLabels = reference.getSecurityLabel();
    transformCodeableConcepts(securityLabels, entry.getConfidentialityCodes());
    // mimeType -> content.attachment.contentType [1..1] code [0..1]
    DocumentReferenceContentComponent content = reference.getContentFirstRep();
    if (content == null)
        throw new InvalidRequestException("Missing content field in DocumentReference");
    Attachment attachment = content.getAttachment();
    if (attachment == null)
        throw new InvalidRequestException("Missing attachment field in DocumentReference");
    entry.setMimeType(attachment.getContentType());
    // languageCode -> content.attachment.language code [0..1]
    entry.setLanguageCode(attachment.getLanguage());
    // size -> content.attachment.size integer [0..1] The size is calculated
    if (attachment.hasSize())
        entry.setSize((long) attachment.getSize());
    // on the data prior to base64 encoding, if the data is base64 encoded.
    // hash -> content.attachment.hash string [0..1]
    byte[] hash = attachment.getHash();
    if (hash != null)
        entry.setHash(Hex.encodeHexString(hash));
    // comments -> content.attachment.title string [0..1]
    String comments = attachment.getTitle();
    if (comments != null)
        entry.setComments(localizedString(comments));
    // creationTime -> content.attachment.creation dateTime [0..1]
    if (attachment.hasCreation()) {
        if (entry.getCreationTime() == null)
            entry.setCreationTime(timestampFromDate(attachment.getCreationElement()));
        else if (!timestampFromDate(attachment.getCreationElement()).equals(entry.getCreationTime()))
            throw new InvalidRequestException("DocumentReference.date does not match attachment.creation element");
    }
    // formatCode -> content.format Coding [0..1]
    Coding coding = content.getFormat();
    entry.setFormatCode(transform(coding));
    DocumentReferenceContextComponent context = reference.getContext();
    // Instead: referenceIdList -> related.identifier
    for (Reference ref : context.getRelated()) {
        Identifiable refId = transformReferenceToIdentifiable(ref, reference);
        if (refId != null) {
            ReferenceId referenceId = new ReferenceId();
            referenceId.setAssigningAuthority(new CXiAssigningAuthority(null, refId.getAssigningAuthority().getUniversalId(), refId.getAssigningAuthority().getUniversalIdType()));
            referenceId.setId(refId.getId());
            entry.getReferenceIdList().add(referenceId);
        }
    }
    // Currently not mapped
    /*for (Reference encounterRef : context.getEncounter()) {
        	ReferenceId referenceId = new ReferenceId();
        	Identifiable id = transformReferenceToIdentifiable(encounterRef, reference);
        	if (id != null) {
        	  referenceId.setIdTypeCode(ReferenceId.ID_TYPE_ENCOUNTER_ID);        	
        	  referenceId.setId(id.getId());
        	  //referenceId.setAssigningAuthority(new CXiAid.getAssigningAuthority().getUniversalId());
			  entry.getReferenceIdList().add(referenceId );
        }*/
    // eventCodeList -> context.event CodeableConcept [0..*]
    List<CodeableConcept> events = context.getEvent();
    transformCodeableConcepts(events, entry.getEventCodeList());
    // serviceStartTime serviceStopTime -> context.period Period [0..1]
    Period period = context.getPeriod();
    if (period != null) {
        entry.setServiceStartTime(timestampFromDate(period.getStartElement()));
        entry.setServiceStopTime(timestampFromDate(period.getEndElement()));
    }
    // healthcareFacilityTypeCode -> context.facilityType CodeableConcept
    // [0..1]
    entry.setHealthcareFacilityTypeCode(transformCodeableConcept(context.getFacilityType()));
    // practiceSettingCode -> context.practiceSetting CodeableConcept [0..1]
    entry.setPracticeSettingCode(transformCodeableConcept(context.getPracticeSetting()));
    Extension originalRole = reference.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (originalRole != null) {
        if (originalRole.getValue() instanceof Coding) {
            Coding value = (Coding) originalRole.getValue();
            String system = noPrefix(value.getSystem());
            String code = value.getCode();
            entry.setExtraMetadata(Collections.singletonMap("urn:e-health-suisse:2020:originalProviderRole", Collections.singletonList(code + "^^^&" + system + "&ISO")));
        }
    }
    Extension deletionStatus = reference.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-deletionstatus");
    if (deletionStatus != null) {
        if (deletionStatus.getValue() instanceof Coding) {
            Coding value = (Coding) deletionStatus.getValue();
            String code = value.getCode();
            entry.setExtraMetadata(Collections.singletonMap("urn:e-health-suisse:2019:deletionStatus", Collections.singletonList("urn:e-health-suisse:2019:deletionStatus:" + code)));
        }
    }
    // Patient.identifier.use element set to ‘usual’.
    if (context.hasSourcePatientInfo()) {
        entry.setSourcePatientId(transformReferenceToIdentifiable(context.getSourcePatientInfo(), reference));
        entry.setSourcePatientInfo(transformReferenceToPatientInfo(context.getSourcePatientInfo(), reference));
    }
}