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Example 16 with Group

use of org.hl7.fhir.r4.model.Group in project kindling by HL7.

the class Publisher method processWarnings.

private void processWarnings(boolean showOnlyErrors) throws Exception {
    String xslt = Utilities.path(page.getFolders().rootDir, "implementations", "xmltools", "OwnerResources.xslt");
    OutputStreamWriter s = new OutputStreamWriter(new FileOutputStream(page.getFolders().dstDir + "warnings.xml"), "UTF-8");
    s.write("<warnings>");
    for (WorkGroup wg : page.getDefinitions().getWorkgroups().values()) {
        s.write("<wg code=\"" + wg.getCode() + "\" name=\"" + wg.getName() + "\" url=\"" + wg.getUrl() + "\"/>\r\n");
    }
    for (PageInformation pn : page.getDefinitions().getPageInfo().values()) {
        s.write("<page name=\"" + pn.getName() + "\" wg=\"" + pn.getWgCode() + "\" fmm=\"" + pn.getFmm() + "\"/>\r\n");
    }
    try {
        s.write(new String(XsltUtilities.saxonTransform(page.getFolders().dstDir + "profiles-resources.xml", xslt)));
        s.write(new String(XsltUtilities.saxonTransform(page.getFolders().dstDir + "profiles-types.xml", xslt)));
        s.write(new String(XsltUtilities.saxonTransform(page.getFolders().dstDir + "profiles-others.xml", xslt)));
    } catch (Exception e) {
        for (ValidationMessage err : page.getValidationErrors()) {
            if (!page.getSuppressedMessages().contains(err.getDisplay()))
                System.out.println(err.summary());
        }
        System.out.println("WARNING: Unable to create warnings file - one or more profiles-* files unavailable or invalid");
        System.out.println("To determine the cause of the build failure, look in the log prior to the warning and information messages immediately above");
    }
    for (ValidationMessage e : page.getValidationErrors()) {
        if (!page.getSuppressedMessages().contains(e.getDisplay()))
            s.write(e.toXML());
    }
    s.write("</warnings>");
    s.flush();
    s.close();
    String xslt2 = Utilities.path(page.getFolders().rootDir, "implementations", "xmltools", "CategorizeWarnings.xslt");
    FileOutputStream s2 = new FileOutputStream(page.getFolders().dstDir + "work-group-warnings.xml");
    try {
        s2.write(XsltUtilities.saxonTransform(page.getFolders().dstDir + "warnings.xml", xslt2).getBytes("UTF8"));
    } catch (Exception e) {
    // nothing - do not want to know.
    }
    s2.flush();
    s2.close();
    String xslt3 = Utilities.path(page.getFolders().rootDir, "implementations", "xmltools", "RenderWarnings.xslt");
    try {
        String hw = XsltUtilities.saxonTransform(page.getFolders().dstDir + "work-group-warnings.xml", xslt3);
        if (!showOnlyErrors)
            page.log(hw, LogMessageType.Process);
    } catch (Exception e) {
    // nothing - do not want to know.
    }
    int i = 0;
    int w = 0;
    int ee = 0;
    for (ValidationMessage e : page.getValidationErrors()) {
        if (e.getLevel() == IssueSeverity.ERROR || e.getLevel() == IssueSeverity.FATAL) {
            ee++;
            page.log(e.summary(), LogMessageType.Hint);
        } else if (e.getLevel() == IssueSeverity.WARNING) {
            w++;
        } else if (e.getLevel() == IssueSeverity.INFORMATION) {
            i++;
        }
    }
    page.getQa().setCounts(ee, w, i);
}
Also used : WorkGroup(org.hl7.fhir.definitions.model.WorkGroup) ValidationMessage(org.hl7.fhir.utilities.validation.ValidationMessage) PageInformation(org.hl7.fhir.definitions.model.Definitions.PageInformation) FileOutputStream(java.io.FileOutputStream) OutputStreamWriter(java.io.OutputStreamWriter) TransformerException(javax.xml.transform.TransformerException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileNotFoundException(java.io.FileNotFoundException) UnsupportedEncodingException(java.io.UnsupportedEncodingException) ContactPoint(org.hl7.fhir.r5.model.ContactPoint)

Example 17 with Group

use of org.hl7.fhir.r4.model.Group in project kindling by HL7.

the class PageProcessor method processProfileIncludes.

public String processProfileIncludes(String filename, String fileid, Profile pack, ConstraintStructure profile, String xml, String json, String tx, String src, String master, String path, String intro, String notes, ImplementationGuideDefn ig, boolean isDict, boolean hasNarrative) throws Exception {
    String workingTitle = null;
    int level = (ig == null || ig.isCore()) ? 0 : 1;
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = src.indexOf("%>");
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = src.indexOf("%]");
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String[] com = s2.split(" ");
        if (com[0].equals("profileheader"))
            src = s1 + profileHeader(fileid, com.length > 1 ? com[1] : "", hasExamples(pack)) + s3;
        else if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("settitle")) {
            workingTitle = s2.substring(9).replace("{", "<%").replace("}", "%>");
            src = s1 + s3;
        } else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing resource " + filename);
        else if (com[0].equals("pageheader"))
            src = s1 + pageHeader(pack.metadata("name")) + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(level) + s3;
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + (workingTitle == null ? Utilities.escapeXml("StructureDefinition: " + profile.getTitle()) : workingTitle) + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + (workingTitle == null ? Utilities.escapeXml("StructureDefinition: " + profile.getTitle()) : Utilities.escapeXml(workingTitle)) + s3;
        else if (com[0].equals("profiletitle"))
            src = s1 + Utilities.escapeXml(pack.metadata("name")) + s3;
        else if (com[0].equals("filetitle"))
            src = s1 + (filename.contains(".") ? filename.substring(0, filename.lastIndexOf(".")) : filename) + s3;
        else if (com[0].equals("name"))
            src = s1 + filename + s3;
        else if (com[0].equals("date")) {
            if (!Utilities.noString(pack.metadata("date"))) {
                Date d = new SimpleDateFormat("yyyy-MM-dd").parse(pack.metadata("date"));
                src = s1 + Config.DATE_FORMAT().format(d) + s3;
            } else
                src = s1 + "[no date]" + s3;
        } else if (com[0].equals("version"))
            src = s1 + ini.getStringProperty("FHIR", "version") + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("definition"))
            src = s1 + Utilities.escapeXml(pack.metadata("description")) + s3;
        else if (com[0].equals("status"))
            src = s1 + describeStatus(pack.metadata("status")) + s3;
        else if (com[0].equals("author"))
            src = s1 + Utilities.escapeXml(pack.metadata("author.name")) + s3;
        else if (com[0].equals("xml"))
            src = s1 + xml + s3;
        else if (com[0].equals("json"))
            src = s1 + json + s3;
        else if (com[0].equals("profiledesc")) {
            src = s1 + Utilities.escapeXml(profile.getResource().getDescription()) + s3;
        } else if (com[0].equals("tx"))
            src = s1 + tx + s3;
        else if (com[0].equals("inv"))
            src = s1 + genProfileConstraints(profile.getResource()) + s3;
        else if (com[0].equals("plural"))
            src = s1 + Utilities.pluralizeMe(filename) + s3;
        else if (com[0].equals("notes"))
            src = s1 + "todo" + /*Utilities.fileToString(folders.srcDir + filename+File.separatorChar+filename+".html")*/
            s3;
        else if (com[0].equals("dictionary"))
            src = s1 + "todo" + s3;
        else if (com[0].equals("breadcrumb"))
            src = s1 + breadCrumbManager.make(filename) + s3;
        else if (com[0].equals("navlist"))
            src = s1 + breadCrumbManager.navlist(filename, genlevel(level)) + s3;
        else if (com[0].equals("breadcrumblist"))
            src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(filename, "profile:" + path, genlevel(0), profile.getResource().getName()) : ig.makeList(filename, "profile:" + path, genlevel(level), profile.getResource().getName())) + s3;
        else if (com[0].equals("year"))
            src = s1 + new SimpleDateFormat("yyyy").format(new Date()) + s3;
        else if (com[0].equals("buildId"))
            src = s1 + buildId + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(0) + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].equals("profileurl"))
            src = s1 + profile.getResource().getUrl() + s3;
        else if (com[0].equals("baseURL"))
            src = s1 + Utilities.URLEncode(baseURL) + s3;
        else if (com[0].equals("baseURLn"))
            src = s1 + Utilities.appendForwardSlash(baseURL) + s3;
        else if (com[0].equals("base-link"))
            src = s1 + baseLink(profile.getResource(), genlevel(level)) + s3;
        else if (com[0].equals("profile-structure-table-diff"))
            src = s1 + generateProfileStructureTable(profile, true, filename, pack.getId(), genlevel(level)) + s3;
        else if (com[0].equals("profile-structure-table"))
            src = s1 + generateProfileStructureTable(profile, false, filename, pack.getId(), genlevel(level)) + s3;
        else if (com[0].equals("maponthispage"))
            src = s1 + mapOnPageProfile(profile.getResource()) + s3;
        else if (com[0].equals("mappings"))
            src = s1 + mappingsProfile(profile.getResource()) + s3;
        else if (com[0].equals("definitions"))
            src = s1 + definitionsProfile(profile.getResource(), genlevel(level)) + s3;
        else if (com[0].equals("profile.review"))
            src = s1 + profileReviewLink(profile) + s3;
        else if (com[0].equals("profile.datadictionary"))
            src = s1 + profileDictionaryLink(profile) + s3;
        else if (com[0].equals("profile.tx"))
            src = s1 + getTerminologyNotes(profile.getResource(), level) + s3;
        else if (com[0].equals("profile.inv"))
            src = s1 + getInvariantList(profile.getResource()) + s3;
        else if (com[0].equals("draft-note"))
            src = s1 + getDraftNote(pack, genlevel(level)) + s3;
        else if (com[0].equals("pagepath"))
            src = s1 + filename + s3;
        else if (com[0].equals("rellink")) {
            if (!filename.contains(".html"))
                src = s1 + filename + ".html" + s3;
            else
                src = s1 + filename + s3;
        } else if (com[0].equals("schematron"))
            src = s1 + (isDict ? "<i>None</i>" : "<a href=\"" + filename + ".sch\">Schematron</a>") + s3;
        else if (com[0].equals("summary"))
            src = s1 + generateHumanSummary(profile.getResource(), genlevel(level)) + s3;
        else if (com[0].equals("profile-examples"))
            src = s1 + generateProfileExamples(pack, profile) + s3;
        else if (com[0].equals("profile-extensions-table"))
            src = s1 + "<p><i>Todo</i></p>" + s3;
        else if (com[0].equals("definitionsonthispage"))
            src = s1 + "<p><i>Todo</i></p>" + s3;
        else if (com[0].equals("profile.intro"))
            src = s1 + genProfileDoco(pack, intro) + s3;
        else if (com[0].equals("profile.notes"))
            src = s1 + genProfileDoco(pack, notes) + s3;
        else if (com[0].equals("search-footer"))
            src = s1 + searchFooter(level) + s3;
        else if (com[0].equals("search-header"))
            src = s1 + searchHeader(level) + s3;
        else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (com[0].equals("wg")) {
            String wg = profile.getWg().getCode();
            if (Utilities.noString(wg))
                pack.getWg();
            if (Utilities.noString(wg) && profile.getDefn() != null)
                wg = profile.getDefn().getWg().getCode();
            if (wg == null || !definitions.getWorkgroups().containsKey(wg))
                src = s1 + "(No assigned work group) (" + wg + ") (4)" + s3;
            else
                src = s1 + "<a _target=\"blank\" href=\"" + definitions.getWorkgroups().get(wg).getUrl() + "\">" + definitions.getWorkgroups().get(wg).getName() + "</a> Work Group" + s3;
        } else if (com[0].equals("fmm-style")) {
            String fmm = ToolingExtensions.readStringExtension(profile.getResource(), ToolingExtensions.EXT_FMM_LEVEL);
            StandardsStatus ss = ToolingExtensions.getStandardsStatus(profile.getResource());
            src = s1 + fmmBarColorStyle(ss, fmm) + s3;
        } else if (com[0].equals("fmm")) {
            String fmm = profile.getFmm();
            if (Utilities.noString(fmm))
                fmm = pack.getFmmLevel();
            src = s1 + getFmmFromlevel(genlevel(level), fmm) + s3;
        } else if (com[0].equals("profile-context"))
            src = s1 + getProfileContext(pack.getCandidateResource(), genlevel(level)) + s3;
        else if (com[0].equals("sstatus")) {
            StandardsStatus ss = ToolingExtensions.getStandardsStatus(profile.getResource());
            if (ss == null)
                ss = StandardsStatus.INFORMATIVE;
            if (ss == StandardsStatus.NORMATIVE && ToolingExtensions.hasExtension(profile.getResource(), ToolingExtensions.EXT_NORMATIVE_VERSION))
                src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a> (from v" + ToolingExtensions.readStringExtension(profile.getResource(), ToolingExtensions.EXT_NORMATIVE_VERSION) + ")" + s3;
            else
                src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a>" + s3;
        } else if (com[0].equals("past-narrative-link")) {
            if (hasNarrative)
                src = s1 + s3;
            else
                src = s1 + "<p><a href=\"#DomainResource.text.div-end\">Jump past Narrative</a></p>" + s3;
        } else if (com[0].equals("resurl")) {
            if (Utilities.noString(pack.metadata("id")))
                src = s1 + s3;
            else
                src = s1 + "The id of this profile is " + pack.metadata("id") + s3;
        } else if (com[0].equals("res-type-count")) {
            src = s1 + definitions.getResources().size() + s3;
        } else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing resource " + filename);
    }
    return src;
}
Also used : IniFile(org.hl7.fhir.utilities.IniFile) File(java.io.File) CSFile(org.hl7.fhir.utilities.CSFile) TextFile(org.hl7.fhir.utilities.TextFile) SimpleDateFormat(java.text.SimpleDateFormat) StandardsStatus(org.hl7.fhir.utilities.StandardsStatus) ContactPoint(org.hl7.fhir.r5.model.ContactPoint) UcumException(org.fhir.ucum.UcumException) TransformerException(javax.xml.transform.TransformerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) URISyntaxException(java.net.URISyntaxException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) FileNotFoundException(java.io.FileNotFoundException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Date(java.util.Date)

Example 18 with Group

use of org.hl7.fhir.r4.model.Group in project kindling by HL7.

the class PageProcessor method processPageIncludes.

public String processPageIncludes(String file, String src, String type, Map<String, String> others, String pagePath, Resource resource, List<String> tabs, String crumbTitle, Object object, ImplementationGuideDefn ig, ResourceDefn rd, WorkGroup wg) throws Exception {
    String workingTitle = null;
    int level = ig == null ? file.contains(File.separator) ? 1 : 0 : ig.isCore() ? 0 : 1;
    boolean even = false;
    String name = file.substring(0, file.lastIndexOf("."));
    String searchAdditions = "";
    while (src.contains("<%") || src.contains("[%")) {
        int i1 = src.indexOf("<%");
        int i2 = i1 == -1 ? -1 : src.substring(i1).indexOf("%>") + i1;
        if (i1 == -1) {
            i1 = src.indexOf("[%");
            i2 = i1 == -1 ? -1 : src.substring(i1).indexOf("%]") + i1;
        }
        String s1 = src.substring(0, i1);
        String s2 = src.substring(i1 + 2, i2).trim();
        String s3 = src.substring(i2 + 2);
        String[] com = s2.split(" ");
        if (s2.startsWith("!")) {
            src = s1 + s3;
        } else if (com.length == 4 && com[0].equals("edt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgDT(com[1], xmlForDt(com[1], com[2]), treeForDt(com[1]), umlForDt(com[1], com[3]), umlForDt(com[1], com[3] + "b"), profileRef(com[1]), tsForDt(com[1]), jsonForDt(com[1], com[2]), ttlForDt(com[1], com[2]), diffForDt(com[1], com[2])) + s3;
        } else if (com.length == 3 && com[0].equals("dt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgDT(com[1], xmlForDt(com[1], file), treeForDt(com[1]), umlForDt(com[1], com[2]), umlForDt(com[1], com[2] + "b"), profileRef(com[1]), tsForDt(com[1]), jsonForDt(com[1], file), ttlForDt(com[1], file), diffForDt(com[1], file)) + s3;
        } else if (com.length == 3 && com[0].equals("adt")) {
            if (tabs != null)
                tabs.add("tabs-" + com[1]);
            src = s1 + orgADT(com[1], treeForDt(com[1]), umlForDt(com[1], com[2]), umlForDt(com[1], com[2] + "b"), diffForDt(com[1], file)) + s3;
        } else if (com.length == 2 && com[0].equals("dt.constraints"))
            src = s1 + genConstraints(com[1], genlevel(level)) + s3;
        else if (com.length == 2 && com[0].equals("dt.restrictions"))
            src = s1 + genRestrictions(com[1]) + s3;
        else if (com.length == 2 && com[0].equals("dictionary"))
            src = s1 + dictForDt(com[1]) + s3;
        else if (com[0].equals("othertabs"))
            src = s1 + genOtherTabs(com[1], tabs) + s3;
        else if (com[0].equals("dtheader"))
            src = s1 + dtHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("atheader"))
            src = s1 + atHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("mdtheader"))
            src = s1 + mdtHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("edheader"))
            src = s1 + edHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("elheader"))
            src = s1 + elHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("belheader"))
            src = s1 + belHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("extheader"))
            src = s1 + extHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("mmheader"))
            src = s1 + mmHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("cdheader"))
            src = s1 + cdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("diheader"))
            src = s1 + diHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ctheader"))
            src = s1 + ctHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ucheader"))
            src = s1 + ucHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("rrheader"))
            src = s1 + rrHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("drheader"))
            src = s1 + drHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("adheader"))
            src = s1 + adHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("pdheader"))
            src = s1 + pdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("tdheader"))
            src = s1 + tdHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("narrheader"))
            src = s1 + narrHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("statheader"))
            src = s1 + statHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("ordistheader"))
            src = s1 + ordistHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("profilesheader"))
            src = s1 + profilesHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("refheader"))
            src = s1 + refHeader(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("resourcesheader"))
            src = s1 + resourcesHeader(com.length > 1 ? com[1] : null) + s3;
        else // src = s1+resourcesHeader(name, com.length > 1 ? com[1] : null)+s3;
        if (com[0].equals("txheader"))
            src = s1 + txHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("sct-vs-list"))
            src = s1 + getSnomedCTVsList() + s3;
        else if (com[0].equals("sct-concept-list"))
            src = s1 + getSnomedCTConceptList() + s3;
        else if (com[0].equals("txheader0"))
            src = s1 + (level > 0 ? "" : txHeader(name, com.length > 1 ? com[1] : null)) + s3;
        else if (com[0].equals("fmtheader"))
            src = s1 + fmtHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("cmpheader"))
            src = s1 + cmpHeader(name, com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("dictheader"))
            src = s1 + dictHeader(((Bundle) resource).getId().toLowerCase(), com.length > 1 ? com[1] : "") + s3;
        else // src = s1+atomHeader(name, com.length > 1 ? com[1] : null)+s3;
        if (com[0].equals("codelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, true, file) + s3;
        else if (com[0].equals("codelist-nh"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, false, false, file) + s3;
        else if (com[0].equals("linkcodelist"))
            src = s1 + codelist((CodeSystem) resource, com.length > 1 ? com[1] : null, true, false, file) + s3;
        else if (com[0].equals("toc"))
            src = s1 + generateToc() + s3;
        else if (com[0].equals("codetoc"))
            src = s1 + codetoc(com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("resheader")) {
            if (resource != null && resource instanceof StructureDefinition)
                src = s1 + resHeader(((StructureDefinition) resource).getId().toLowerCase(), ((StructureDefinition) resource).getId(), com.length > 1 ? com[1] : null) + s3;
            else if (rd != null) {
                src = s1 + resHeader(rd.getName().toLowerCase(), rd.getName(), com.length > 1 ? com[1] : null) + s3;
            } else
                src = s1 + s3;
        } else if (com[0].equals("aresheader"))
            src = s1 + abstractResHeader("document", "Document", com.length > 1 ? com[1] : null) + s3;
        else if (com[0].equals("onthispage"))
            src = s1 + onThisPage(s2.substring(com[0].length() + 1)) + s3;
        else if (com[0].equals("maponthispage"))
            src = s1 + mapOnThisPage(null) + s3;
        else if (com[0].equals("res-category")) {
            even = false;
            src = s1 + resCategory(s2.substring(com[0].length() + 1)) + s3;
        } else if (com[0].equals("res-item")) {
            even = !even;
            src = s1 + resItem(com[1], even) + s3;
        } else if (com[0].equals("resdesc")) {
            src = s1 + resDesc(com[1]) + s3;
        } else if (com[0].equals("rescat")) {
            src = s1 + resCat(com.length == 1 ? null : s2.substring(7)) + s3;
        } else if (com[0].equals("svg"))
            src = s1 + svgs.get(com[1]) + s3;
        else if (com[0].equals("diagram"))
            src = s1 + new SvgGenerator(this, genlevel(level), null, false, file.contains("datatypes"), version).generate(folders.srcDir + com[1], com[2]) + s3;
        else if (com[0].equals("file")) {
            if (new File(folders.templateDir + com[1] + ".html").exists()) {
                src = s1 + TextFile.fileToString(folders.templateDir + com[1] + ".html") + s3;
            } else {
                src = s1 + TextFile.fileToString(folders.srcDir + com[1] + ".html") + s3;
            }
        } else if (com[0].equals("v2xref"))
            src = s1 + xreferencesForV2(name, com[1]) + s3;
        else if (com[0].equals("vs-warning"))
            src = s1 + vsWarning((ValueSet) resource) + s3;
        else if (com[0].equals("res-status-special"))
            src = s1 + vsSpecialStatus((DomainResource) resource) + s3;
        else if (com[0].equals("conceptmaplistv2"))
            src = s1 + conceptmaplist("http://terminology.hl7.org/ValueSet/v2-" + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name), com[1]) + s3;
        else if (com[0].equals("conceptmaplistv3"))
            src = s1 + conceptmaplist("http://terminology.hl7.org/ValueSet/v3-" + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name), com[1]) + s3;
        else if (com[0].equals("conceptmaplistvs")) {
            ValueSet vs = (ValueSet) resource;
            String ref;
            if (vs == null) {
                ref = "http://hl7.org/fhir/ValueSet/" + Utilities.fileTitle(file);
            } else {
                ref = vs.getUrl();
            }
            src = s1 + conceptmaplist(ref, com[1]) + s3;
        } else if (com[0].equals("settitle")) {
            workingTitle = s2.substring(9).replace("{", "<%").replace("}", "%>");
            src = s1 + s3;
        } else if (com[0].equals("igregistries")) {
            src = s1 + igRegistryList(com[1], com[2]) + s3;
        } else if (com[0].equals("dtmappings")) {
            src = s1 + genDataTypeMappings(com[1]) + s3;
        } else if (com[0].equals("dtusage")) {
            src = s1 + genDataTypeUsage(com[1]) + s3;
        } else if (com[0].equals("v3xref")) {
            src = s1 + xreferencesForV3(name) + s3;
        } else if (com[0].equals("setlevel")) {
            level = Integer.parseInt(com[1]);
            src = s1 + s3;
        } else if (com[0].equals("w5")) {
            src = s1 + genW5("true".equals(com[1])) + s3;
        } else if (com[0].equals("res-ref-list")) {
            src = s1 + genResRefList(com[1]) + s3;
        } else if (com[0].equals("sclist")) {
            src = s1 + genScList(com[1]) + s3;
        } else if (com[0].equals("xcm")) {
            src = s1 + getXcm(com[1]) + s3;
        } else if (com[0].equals("xcmchk")) {
            src = s1 + getXcmChk(com[1]) + s3;
        } else if (com[0].equals("sstatus")) {
            if (com.length == 1) {
                StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
                if (ss == null)
                    ss = StandardsStatus.INFORMATIVE;
                if (ss == StandardsStatus.NORMATIVE && ToolingExtensions.hasExtension((DomainResource) resource, ToolingExtensions.EXT_NORMATIVE_VERSION))
                    src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a> (from v" + ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_NORMATIVE_VERSION) + ")" + s3;
                else
                    src = s1 + "<a href=\"" + genlevel(level) + "versions.html#std-process\">" + ss.toDisplay() + "</a>" + s3;
            } else
                src = s1 + getStandardsStatus(com[1]) + s3;
        } else if (com[0].equals("wg")) {
            src = s1 + getWgLink(file, wg == null && com.length > 1 ? wg(com[1]) : wg) + s3;
        } else if (com[0].equals("wgt")) {
            src = s1 + getWgTitle(wg == null && com.length > 1 ? wg(com[1]) : wg) + s3;
        } else if (com[0].equals("ig.registry")) {
            src = s1 + buildIgRegistry(ig, com[1]) + s3;
        } else if (com[0].equals("search-link")) {
            src = s1 + searchLink(s2) + s3;
        } else if (com[0].equals("search-footer")) {
            src = s1 + searchFooter(level) + s3;
        } else if (com[0].equals("search-header")) {
            src = s1 + searchHeader(level) + s3;
        } else if (com[0].equals("profileheader")) {
            src = s1 + profileHeader(((StructureDefinition) resource).getId().toLowerCase(), com[1], hasExamples((StructureDefinition) resource, ig)) + s3;
        } else if (com[0].equals("resource-table")) {
            src = s1 + genResourceTable(definitions.getResourceByName(com[1]), genlevel(level)) + s3;
        } else if (com[0].equals("dtextras")) {
            src = s1 + produceDataTypeExtras(com[1], false) + s3;
        } else if (com[0].equals("dtextensions")) {
            src = s1 + produceDataTypeExtras(com[1], true) + s3;
        } else if (com[0].equals("tx")) {
            src = s1 + produceDataTypeTx(com[1]) + s3;
        } else if (com[0].equals("extension-diff")) {
            StructureDefinition ed = workerContext.fetchResource(StructureDefinition.class, com[1]);
            src = s1 + generateExtensionTable(ed, "extension-" + com[1], "false", genlevel(level)) + s3;
        } else if (com[0].equals("profile-diff")) {
            ConstraintStructure p = definitions.findProfile(com[1]);
            src = s1 + generateProfileStructureTable(p, true, com[1] + ".html", com[1], genlevel(level)) + s3;
        } else if (com[0].equals("example")) {
            String[] parts = com[1].split("\\/");
            Example e = findExample(parts[0], parts[1]);
            src = s1 + genExample(e, com.length > 2 ? Integer.parseInt(com[2]) : 0, genlevel(level)) + s3;
        } else if (com[0].equals("r3r4transform")) {
            src = s1 + dtR3R4Transform(com[1]) + s3;
        } else if (com[0].equals("fmm-style")) {
            String fmm = resource == null ? "N/A" : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            src = s1 + fmmBarColorStyle(ss, fmm) + s3;
        } else if (com[0].equals("fmm")) {
            String fmm = resource == null || !(resource instanceof CanonicalResource) ? getFmm(com[1], false) : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            StandardsStatus ss = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            if (StandardsStatus.EXTERNAL == ss)
                src = s1 + getFmmFromlevel(genlevel(level), "N/A") + s3;
            else if (StandardsStatus.NORMATIVE == ss)
                src = s1 + getFmmFromlevel(genlevel(level), "<a href=\"" + genlevel(level) + "versions.html#std-process\">N</a>") + s3;
            else
                src = s1 + getFmmFromlevel(genlevel(level), fmm) + s3;
        } else if (com[0].equals("fmmna")) {
            String fmm = "N/A";
            src = s1 + getFmmFromlevel(genlevel(level), fmm) + s3;
        } else if (com[0].equals("mostlynormative")) {
            String p = null;
            String wt = workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null ? "" : getMostlyNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("mixednormative")) {
            String p = null;
            String wt = workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null ? "" : getMixedNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("normative")) {
            String p = object instanceof Object ? rd.getNormativePackage() : null;
            String wt = object instanceof Object ? rd.getName() + " Operation " + ((Operation) object).getName() : workingTitle;
            if (com.length >= 3) {
                if (!com[2].equals("%check"))
                    p = com[2];
                else if (StandardsStatus.NORMATIVE == ToolingExtensions.getStandardsStatus((DomainResource) resource)) {
                    p = resource.getUserString("ballot.package");
                    wt = ((CanonicalResource) resource).fhirType() + " " + ((CanonicalResource) resource).present();
                }
            }
            src = s1 + (p == null && com.length != 2 ? "" : getNormativeNote(genlevel(level), p, com[1], wt, file)) + s3;
        } else if (com[0].equals("normative-op")) {
            String p = rd.getNormativePackage();
            String wt = rd.getName() + " Operation " + ((Operation) object).getName();
            StandardsStatus st = ((Operation) object).getStandardsStatus();
            if (st == null)
                st = ToolingExtensions.getStandardsStatus((DomainResource) resource);
            src = s1 + (st == StandardsStatus.NORMATIVE ? getNormativeNote(genlevel(level), p, com[1], wt, file) : "") + s3;
        } else if (com[0].equals("fmmshort")) {
            String fmm = resource == null || !(resource instanceof CanonicalResource) ? getFmm(com[1], true) : ToolingExtensions.readStringExtension((DomainResource) resource, ToolingExtensions.EXT_FMM_LEVEL);
            String npr = resource == null || !(resource instanceof CanonicalResource) ? getNormativePackageRef(com[1]) : "";
            src = s1 + getFmmShortFromlevel(genlevel(level), fmm) + npr + s3;
        } else if (com[0].equals("normative-pages")) {
            src = s1 + getNormativeList(genlevel(level), com[1]) + s3;
        } else if (s2.startsWith("search-additions\r\n")) {
            searchAdditions = s2.substring(16).trim();
            src = s1 + s3;
        } else if (com[0].equals("complinks")) {
            src = s1 + (rd == null ? "" : getCompLinks(rd, com.length > 1 ? com[1] : null)) + s3;
        } else if (com[0].equals("diff")) {
            String p = com[1];
            String pd = p.contains("#") ? p.substring(0, p.indexOf("#")) : p;
            String t = s2.substring(com[0].length() + com[1].length() + 2);
            src = s1 + "<a href=\"" + p + "\">" + t + "</a> <a href=\"http://services.w3.org/htmldiff?doc1=http%3A%2F%2Fhl7.org%2Ffhir%2F2018May%2F" + pd + "&amp;doc2=http%3A%2F%2Fbuild.fhir.org%2F" + pd + "\" no-external=\"true\" style=\"border: 1px solid lightgrey; white-space: nowrap; background-color: #EDFDFE; padding: 2px 2px 2px 2px\">&Delta;B</a>" + s3;
        } else if (com[0].equals("diffx")) {
            String p1 = com[1];
            String pd = p1.contains("#") ? p1.substring(0, p1.indexOf("#")) : p1;
            String p2 = com[2];
            String t = s2.substring(com[0].length() + com[1].length() + 2);
            src = s1 + "<a href=\"" + p1 + "\">" + t + "</a> <a href=\"http://services.w3.org/htmldiff?doc1=http%3A%2F%2Fhl7.org%2Ffhir%2F2018May%2F" + p2 + "&amp;doc2=http%3A%2F%2Fbuild.fhir.org%2F" + pd + "\" no-external=\"true\" style=\"border: 1px solid lightgrey; white-space: nowrap; background-color: #EDFDFE; padding: 2px 2px 2px 2px\">&Delta;B</a>" + s3;
        } else if (com[0].equals("StandardsStatus")) {
            src = s1 + getStandardsStatusNote(genlevel(level), com[1], com[2], com.length == 4 ? com[3] : null) + s3;
        } else if (com[0].equals("circular-references")) {
            src = s1 + buildCircularReferenceList(com[1].equals("null") ? null : Boolean.valueOf(com[1])) + s3;
        } else if (com[0].equals("shortparameterlist")) {
            src = s1 + buildShortParameterList(com[1]) + s3;
        } else if (com[0].equals("op-example-link")) {
            src = s1 + buildOpReferenceList(com[1]) + s3;
        } else if (com[0].equals("pattern-impls")) {
            src = s1 + buildPatternList(com[1]) + s3;
        } else if (com[0].equals("diff-analysis")) {
            if ("*".equals(com[1])) {
                updateDiffEngineDefinitions();
                src = s1 + diffEngine.getDiffAsHtml(this) + s3;
            } else {
                StructureDefinition sd = workerContext.fetchTypeDefinition(com[1]);
                if (sd == null)
                    throw new Exception("diff-analysis not found: " + com[1]);
                src = s1 + diffEngine.getDiffAsHtml(this, sd) + s3;
            }
        } else if (com.length != 1)
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
        else if (com[0].equals("pageheader"))
            src = s1 + pageHeader(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("newheader"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader.html") + s3;
        else if (com[0].equals("newheader1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newheader1.html") + s3;
        else if (com[0].equals("footer"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer.html") + s3;
        else if (com[0].equals("newfooter"))
            src = s1 + TextFile.fileToString(folders.srcDir + "newfooter.html") + s3;
        else if (com[0].equals("footer1"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer1.html") + s3;
        else if (com[0].equals("footer2"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer2.html") + s3;
        else if (com[0].equals("footer3"))
            src = s1 + TextFile.fileToString(folders.srcDir + "footer3.html") + s3;
        else if (com[0].equals("title"))
            src = s1 + (workingTitle == null ? Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) : workingTitle) + s3;
        else if (com[0].equals("xtitle"))
            src = s1 + Utilities.escapeXml(name.toUpperCase().substring(0, 1) + name.substring(1)) + s3;
        else if (com[0].equals("name"))
            src = s1 + name + s3;
        else if (com[0].equals("name.tail"))
            src = s1 + fileTail(name) + s3;
        else if (com[0].equals("piperesources"))
            src = s1 + pipeResources() + s3;
        else if (com[0].equals("enteredInErrorTable"))
            src = s1 + enteredInErrorTable() + s3;
        else if (com[0].equals("canonicalname"))
            src = s1 + makeCanonical(name) + s3;
        else if (com[0].equals("prettyname"))
            src = s1 + makePretty(name) + s3;
        else if (com[0].equals("jsonldname"))
            src = s1 + makeJsonld(name) + s3;
        else if (com[0].equals("version"))
            src = s1 + version + s3;
        else if (com[0].equals("gendate"))
            src = s1 + Config.DATE_FORMAT().format(new Date()) + s3;
        else if (com[0].equals("maindiv"))
            src = s1 + "<div class=\"content\">" + s3;
        else if (com[0].equals("/maindiv"))
            src = s1 + "</div>" + s3;
        else if (com[0].equals("mappings-table"))
            src = s1 + genMappingsTable() + s3;
        else if (com[0].equals("id"))
            src = s1 + (name.contains("|") ? name.substring(0, name.indexOf("|")) : name) + s3;
        else if (com[0].equals("ver"))
            src = s1 + (name.contains("|") ? name.substring(name.indexOf("|") + 1) : "??") + s3;
        else if (com[0].equals("events"))
            src = s1 + getEventsTable(pagePath) + s3;
        else if (com[0].equals("resourcecodes"))
            src = s1 + genResCodes() + s3;
        else if (com[0].equals("datatypecodes"))
            src = s1 + genDTCodes() + s3;
        else if (com[0].equals("allparams"))
            src = s1 + allParamlist() + s3;
        else // src = s1 + genBindingsTable() + s3;
        if (com[0].equals("codeslist"))
            src = s1 + genCodeSystemsTable() + s3;
        else if (com[0].equals("valuesetslist"))
            src = s1 + genValueSetsTable(ig) + s3;
        else if (com[0].equals("namespacelist"))
            src = s1 + genNSList() + s3;
        else if (com[0].equals("extensionslist"))
            src = s1 + genExtensionsTable() + s3;
        else if (com[0].equals("igvaluesetslist"))
            src = s1 + genIGValueSetsTable() + s3;
        else if (com[0].equals("conceptmapslist"))
            src = s1 + genConceptMapsTable() + s3;
        else // src = s1 + genBindingTable(false) + s3;
        if (com[0].equals("resimplall"))
            src = s1 + genResImplList() + s3;
        else if (com[0].equals("txurl"))
            src = s1 + "http://hl7.org/fhir/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("vstxurl"))
            src = s1 + "http://hl7.org/fhir/ValueSet/" + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("csurl")) {
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else {
                CodeSystem cs = (CodeSystem) ((ValueSet) resource).getUserData("cs");
                src = s1 + (cs == null ? "" : cs.getUrl()) + s3;
            }
        } else if (com[0].equals("vsurl")) {
            if (resource == null)
                src = s1 + s3;
            else if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getUrl() + s3;
            else
                src = s1 + ((ValueSet) resource).getUrl() + s3;
        } else if (com[0].equals("txdef"))
            src = s1 + generateCodeDefinition(Utilities.fileTitle(file)) + s3;
        else if (com[0].equals("vsdef"))
            if (resource instanceof CodeSystem)
                src = s1 + processMarkdown("vsdef", ((CodeSystem) resource).getDescription(), genlevel(level)) + s3;
            else
                src = s1 + processMarkdown("vsdef", ((ValueSet) resource).getDescription(), genlevel(level)) + s3;
        else if (com[0].equals("txoid"))
            src = s1 + generateOID((CodeSystem) resource) + s3;
        else if (com[0].equals("vsoid"))
            src = s1 + generateOID((ValueSet) resource) + s3;
        else if (com[0].equals("txname"))
            src = s1 + Utilities.fileTitle(file) + s3;
        else if (com[0].equals("vsname"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).present() + s3;
            else
                src = s1 + ((ValueSet) resource).present() + s3;
        else if (com[0].equals("vsnamed"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getName() + s3;
            else
                src = s1 + ((ValueSet) resource).getName() + s3;
        else if (com[0].equals("vstitle"))
            if (resource instanceof CodeSystem)
                src = s1 + checkTitle(((CodeSystem) resource).getTitle()) + s3;
            else
                src = s1 + checkTitle(((ValueSet) resource).getTitle()) + s3;
        else if (com[0].equals("vsver"))
            if (resource instanceof CodeSystem)
                src = s1 + ((CodeSystem) resource).getVersion() + s3;
            else
                src = s1 + ((ValueSet) resource).getVersion() + s3;
        else if (com[0].equals("vsref")) {
            src = s1 + Utilities.fileTitle((String) resource.getUserData("filename")) + s3;
        } else if (com[0].equals("vsdesc"))
            src = s1 + (resource != null ? new XhtmlComposer(XhtmlComposer.HTML).compose(((ValueSet) resource).getText().getDiv()) : generateVSDesc(Utilities.fileTitle(file))) + s3;
        else if (com[0].equals("txusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(level), true) + s3;
        else if (com[0].equals("vsusage"))
            src = s1 + generateValueSetUsage((ValueSet) resource, genlevel(level), true) + s3;
        else if (com[0].equals("csusage"))
            src = s1 + generateCSUsage((CodeSystem) resource, genlevel(level)) + s3;
        else if (com[0].equals("vssummary"))
            src = s1 + "todo" + s3;
        else if (com[0].equals("compartmentlist"))
            src = s1 + compartmentlist() + s3;
        else if (com[0].equals("qa"))
            src = s1 + qa.report(this, validationErrors) + s3;
        else if (com[0].equals("comp-title"))
            src = s1 + compTitle(name) + s3;
        else if (com[0].equals("comp-name"))
            src = s1 + compName(name) + s3;
        else if (com[0].equals("comp-desc"))
            src = s1 + compDesc(name) + s3;
        else if (com[0].equals("comp-uri"))
            src = s1 + compUri(name) + s3;
        else if (com[0].equals("comp-identity"))
            src = s1 + compIdentity(name) + s3;
        else if (com[0].equals("comp-membership"))
            src = s1 + compMembership(name) + s3;
        else if (com[0].equals("comp-resources"))
            src = s1 + compResourceMap(name) + s3;
        else if (com[0].equals("breadcrumb"))
            src = s1 + breadCrumbManager.make(name) + s3;
        else if (com[0].equals("navlist"))
            src = s1 + breadCrumbManager.navlist(name, genlevel(level)) + s3;
        else if (com[0].equals("breadcrumblist")) {
            if (object instanceof Operation)
                src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(rd.getName().toLowerCase(), type, genlevel(level), crumbTitle) : ig.makeList(name, type, genlevel(level), crumbTitle)) + s3;
            else
                src = s1 + ((ig == null || ig.isCore()) ? breadCrumbManager.makelist(name, type, genlevel(level), crumbTitle) : ig.makeList(name, type, genlevel(level), crumbTitle)) + s3;
        } else if (com[0].equals("year"))
            src = s1 + new SimpleDateFormat("yyyy").format(new Date()) + s3;
        else if (com[0].equals("buildId"))
            src = s1 + buildId + s3;
        else if (com[0].equals("pub-type"))
            src = s1 + publicationType + s3;
        else if (com[0].equals("pub-notice"))
            src = s1 + publicationNotice + s3;
        else if (com[0].equals("vssource"))
            if (resource instanceof CodeSystem)
                src = s1 + csSource((CodeSystem) resource) + s3;
            else
                src = s1 + vsSource((ValueSet) resource) + s3;
        else if (com[0].equals("vsxref"))
            src = s1 + xreferencesForFhir(name) + s3;
        else if (com[0].equals("vsexpansion"))
            src = s1 + expandValueSet(Utilities.fileTitle(file), resource == null ? null : ((ValueSet) resource), genlevel(level)) + s3;
        else if (com[0].equals("vscld"))
            src = s1 + vsCLD(Utilities.fileTitle(file), resource == null ? null : ((ValueSet) resource), genlevel(level)) + s3;
        else if (com[0].equals("cs-content"))
            src = s1 + csContent(Utilities.fileTitle(file), ((CodeSystem) resource), genlevel(level)) + s3;
        else if (com[0].equals("vsexpansionig"))
            src = s1 + expandValueSetIG((ValueSet) resource, true) + s3;
        else if (com[0].equals("level"))
            src = s1 + genlevel(level) + s3;
        else if (com[0].equals("archive"))
            src = s1 + makeArchives() + s3;
        else if (com[0].equals("pagepath"))
            src = s1 + pagePath + s3;
        else if (com[0].equals("rellink")) {
            if (!pagePath.contains(".html"))
                throw new Error("Invalid link: " + pagePath + " at " + workingTitle);
            src = s1 + Utilities.URLEncode(pagePath) + s3;
        } else if (com[0].equals("baseURL"))
            src = s1 + Utilities.URLEncode(baseURL) + s3;
        else if (com[0].equals("baseURLn"))
            src = s1 + Utilities.appendForwardSlash(baseURL) + s3;
        else if (com[0].equals("profilelist"))
            src = s1 + genProfilelist() + s3;
        else if (com[0].equals("igprofileslist"))
            src = s1 + genIGProfilelist() + s3;
        else if (com[0].equals("operationslist"))
            src = s1 + genOperationList() + s3;
        else if (com[0].equals("example.profile.link"))
            src = s1 + genExampleProfileLink(resource) + s3;
        else if (com[0].equals("id_regex"))
            src = s1 + FormatUtilities.ID_REGEX + s3;
        else if (com[0].equals("resourcecount"))
            src = s1 + Integer.toString(definitions.getResources().size()) + s3;
        else if (others != null && others.containsKey(com[0]))
            src = s1 + others.get(com[0]) + s3;
        else if (com[0].equals("status-codes"))
            src = s1 + genStatusCodes() + s3;
        else if (com[0].equals("dictionary.name")) {
            String n = name.contains(File.separator) ? name.substring(name.lastIndexOf(File.separator) + 1) : name;
            src = s1 + definitions.getDictionaries().get(n).getName() + s3;
        // } else if (com[0].equals("dictionary.view"))
        // src = s1 + ResourceUtilities.representDataElementCollection(this.workerContext, (Bundle) resource, true, "hspc-qnlab-de") + s3;
        } else if (com[0].equals("search-param-pack") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getUserData("pack") + s3;
        else if (com[0].equals("search-param-name") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getName() + s3;
        else if (com[0].equals("search-param-url") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getUrl() + s3;
        else if (com[0].equals("search-param-type") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getType().toCode() + s3;
        else if (com[0].equals("search-param-definition") && resource instanceof SearchParameter)
            src = s1 + ((SearchParameter) resource).getDescription() + s3;
        else if (com[0].equals("search-param-paths") && resource instanceof SearchParameter)
            src = s1 + (((SearchParameter) resource).hasXpath() ? ((SearchParameter) resource).getXpath() : "") + s3;
        else if (com[0].equals("search-param-targets") && resource instanceof SearchParameter) {
            CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
            for (CodeType t : ((SearchParameter) resource).getTarget()) b.append(t.asStringValue());
            src = s1 + b.toString() + s3;
        } else if (com[0].startsWith("!"))
            src = s1 + s3;
        else if (com[0].equals("txsummary"))
            if (resource instanceof CodeSystem)
                src = s1 + txsummary((CodeSystem) resource, genlevel(level)) + s3;
            else
                src = s1 + txsummary((ValueSet) resource, genlevel(level)) + s3;
        else if (com[0].equals("identifierlist"))
            src = s1 + genIdentifierList() + s3;
        else if (com[0].equals("allsearchparams"))
            src = s1 + genAllSearchParams() + s3;
        else if (com[0].equals("internalsystemlist"))
            src = s1 + genCSList() + s3;
        else if (com[0].equals("internalsystemlistx"))
            src = s1 + genCSListX() + s3;
        else if (com[0].equals("example-usage"))
            src = s1 + s3;
        else if (com[0].equals("ig.title"))
            src = s1 + ig.getName() + s3;
        else if (com[0].equals("ig.wglink"))
            src = s1 + igLink(ig) + s3;
        else if (com[0].equals("ig.wgt"))
            src = s1 + ig.getCommittee() + s3;
        else if (com[0].equals("ig.fmm"))
            src = s1 + getFmmFromlevel(genlevel(level), ig.getFmm()) + s3;
        else if (com[0].equals("ig.ballot"))
            src = s1 + ig.getBallot() + s3;
        else if (com[0].equals("operations")) {
            Profile p = (Profile) object;
            src = s1 + genOperations(p.getOperations(), p.getTitle(), p.getId(), false, null, "../", "") + s3;
        } else if (com[0].equals("operations-summary"))
            src = s1 + genOperationsSummary(((Profile) object).getOperations(), rd) + s3;
        else if (com[0].equals("ig.opcount"))
            src = s1 + genOpCount(((Profile) object).getOperations()) + s3;
        else if (com[0].equals("ig-toc"))
            src = s1 + genIgToc(ig) + s3;
        else if (com[0].equals("fhir-path"))
            src = s1 + "../" + s3;
        else if (com[0].equals("vscommittee"))
            src = s1 + vscommittee(resource) + s3;
        else if (com[0].equals("modifier-list"))
            src = s1 + genModifierList() + s3;
        else if (com[0].equals("missing-element-list"))
            src = s1 + genMeaningWhenMissingList() + s3;
        else if (com[0].equals("wgreport"))
            src = s1 + genWGReport() + s3;
        else if (com[0].equals("r3maps-summary"))
            src = s1 + genR3MapsSummary() + s3;
        else if (com[0].equals("wg")) {
            src = s1 + (wg == null || !definitions.getWorkgroups().containsKey(wg) ? "(No assigned work group) (" + wg + " (1))" : "<a _target=\"blank\" href=\"" + definitions.getWorkgroups().get(wg).getUrl() + "\">" + definitions.getWorkgroups().get(wg).getName() + "</a> Work Group") + s3;
        } else if (com[0].equals("profile-context"))
            src = s1 + getProfileContext((CanonicalResource) resource, genlevel(level)) + s3;
        else if (com[0].equals("res-list-maturity"))
            src = s1 + buildResListByMaturity() + s3;
        else if (com[0].equals("res-list-security"))
            src = s1 + buildResListBySecurity() + s3;
        else if (com[0].equals("res-list-fmg"))
            src = s1 + buildResListByFMG() + s3;
        else if (com[0].equals("res-list-ballot"))
            src = s1 + buildResListByBallot() + s3;
        else if (com[0].equals("res-list-committee"))
            src = s1 + buildResListByCommittee() + s3;
        else if (com[0].equals("wglist"))
            src = s1 + buildCommitteeList() + s3;
        else if (com[0].equals("opName"))
            src = s1 + ((Operation) object).getName() + s3;
        else if (com[0].equals("rName"))
            src = s1 + rd.getName() + s3;
        else if (com[0].equals("operation-summary"))
            src = s1 + ((Operation) object).getName() + " summary" + s3;
        else if (com[0].equals("extension-type-list"))
            src = s1 + genExtensionTypeList() + s3;
        else if (com[0].equals("best-practice-list"))
            src = s1 + genBestPracticeList() + s3;
        else if (com[0].equals("wildcard-type-list"))
            src = s1 + genWildcardTypeList() + s3;
        else if (com[0].startsWith("GF#"))
            src = s1 + "<a href=\"https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&amp;tracker_item_id=" + com[0].substring(3) + "\">" + com[0] + "</a>" + s3;
        else if (com[0].startsWith("GFT#"))
            src = s1 + "<a href=\"https://gforge.hl7.org/gf/project/fhir/tracker/?action=TrackerItemEdit&amp;tracker_item_id=" + com[0].substring(3) + "\">Task</a>" + s3;
        else if (com[0].equals("operation")) {
            Operation op = (Operation) object;
            src = s1 + genOperation(op, rd.getName(), rd.getName().toLowerCase(), false, rd.getStatus(), genlevel(level), rd.getNormativePackage()) + s3;
        } else if (com[0].equals("past-narrative-link")) {
            if (object == null || !(object instanceof Boolean))
                src = s1 + s3;
            else
                src = s1 + "<p><a href=\"#DomainResource.text.div-end\">Jump past Narrative</a></p>" + s3;
        } else if (others != null && others.containsKey(s2))
            src = s1 + others.get(s2) + s3;
        else if (com[0].equals("canonical-resources"))
            src = s1 + listCanonicalResources() + s3;
        else if (com[0].equals("metadata-resources"))
            src = s1 + listCanonicalResources() + s3;
        else if (com[0].equals("special-search-parameters")) {
            src = s1 + listSpecialParameters() + s3;
        } else if (com[0].equals("diff-links-all")) {
            src = s1 + genDiffLinks() + s3;
        } else if (com[0].equals("res-type-count")) {
            src = s1 + definitions.getResources().size() + s3;
        } else if (com[0].equals("patterns-analysis")) {
            src = s1 + patternFinder.generateReport() + s3;
        } else if (macros.containsKey(com[0])) {
            src = s1 + macros.get(com[0]) + s3;
        } else
            throw new Exception("Instruction <%" + s2 + "%> not understood parsing page " + file);
    }
    return src;
}
Also used : DomainResource(org.hl7.fhir.r5.model.DomainResource) Operation(org.hl7.fhir.definitions.model.Operation) Profile(org.hl7.fhir.definitions.model.Profile) StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) Example(org.hl7.fhir.definitions.model.Example) OperationExample(org.hl7.fhir.definitions.model.Operation.OperationExample) XhtmlComposer(org.hl7.fhir.utilities.xhtml.XhtmlComposer) ConstraintStructure(org.hl7.fhir.definitions.model.ConstraintStructure) SearchParameter(org.hl7.fhir.r5.model.SearchParameter) ValueSet(org.hl7.fhir.r5.model.ValueSet) StandardsStatus(org.hl7.fhir.utilities.StandardsStatus) FHIRFormatError(org.hl7.fhir.exceptions.FHIRFormatError) TransformerFactoryConfigurationError(javax.xml.transform.TransformerFactoryConfigurationError) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) CodeSystem(org.hl7.fhir.r5.model.CodeSystem) ContactPoint(org.hl7.fhir.r5.model.ContactPoint) UcumException(org.fhir.ucum.UcumException) TransformerException(javax.xml.transform.TransformerException) TransformerConfigurationException(javax.xml.transform.TransformerConfigurationException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) URISyntaxException(java.net.URISyntaxException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) FileNotFoundException(java.io.FileNotFoundException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) Date(java.util.Date) SvgGenerator(org.hl7.fhir.definitions.generators.specification.SvgGenerator) CodeType(org.hl7.fhir.r5.model.CodeType) JsonObject(com.google.gson.JsonObject) IniFile(org.hl7.fhir.utilities.IniFile) File(java.io.File) CSFile(org.hl7.fhir.utilities.CSFile) TextFile(org.hl7.fhir.utilities.TextFile) CanonicalResource(org.hl7.fhir.r5.model.CanonicalResource) SimpleDateFormat(java.text.SimpleDateFormat)

Example 19 with Group

use of org.hl7.fhir.r4.model.Group in project kindling by HL7.

the class PageProcessor method vscommittee.

private String vscommittee(Resource resource) {
    CanonicalResource vs = (CanonicalResource) resource;
    WorkGroup wg = definitions.getWorkgroups().get(ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP));
    return wg == null ? "??" : "<a _target=\"blank\" href=\"" + wg.getUrl() + "\">" + wg.getName() + "</a> Work Group";
}
Also used : WorkGroup(org.hl7.fhir.definitions.model.WorkGroup) CanonicalResource(org.hl7.fhir.r5.model.CanonicalResource)

Example 20 with Group

use of org.hl7.fhir.r4.model.Group in project kindling by HL7.

the class OldSpreadsheetParser method resolveElementReferences.

private void resolveElementReferences(ResourceDefn parent, ElementDefn root) throws Exception {
    for (TypeRef ref : root.getTypes()) {
        if (ref.isElementReference()) {
            ElementDefn referredElement = parent.getRoot().getElementByName(definitions, ref.getName().substring(1), true, false, null);
            if (referredElement == null)
                throw new Exception("Element reference " + ref.getName() + " cannot be found in type " + parent.getName());
            if (referredElement.getDeclaredTypeName() == null)
                throw new Exception("Element reference " + ref.getName() + " in " + parent.getName() + " refers to an anonymous group of elements. Please specify names with the '=<name>' construct in the typename column.");
            ref.setResolvedTypeName(referredElement.getDeclaredTypeName());
        }
    }
    for (ElementDefn element : root.getElements()) {
        resolveElementReferences(parent, element);
    }
}
Also used : TypeRef(org.hl7.fhir.definitions.model.TypeRef) ElementDefn(org.hl7.fhir.definitions.model.ElementDefn) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Aggregations

Test (org.junit.Test)106 Group (org.hl7.fhir.r4.model.Group)74 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)59 ArrayList (java.util.ArrayList)57 BaseFhirIntegrationTest (org.openmrs.module.fhir2.BaseFhirIntegrationTest)50 Group (org.hl7.fhir.dstu3.model.Group)44 FHIRException (org.hl7.fhir.exceptions.FHIRException)37 Cohort (org.openmrs.Cohort)32 Test (org.junit.jupiter.api.Test)29 InputStream (java.io.InputStream)21 Reference (org.hl7.fhir.r4.model.Reference)21 List (java.util.List)16 Complex (org.hl7.fhir.dstu2016may.formats.RdfGenerator.Complex)16 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)16 Coding (org.hl7.fhir.r4.model.Coding)16 Diagnosis (gov.cms.bfd.server.war.commons.Diagnosis)15 IOException (java.io.IOException)13 IdType (org.hl7.fhir.dstu3.model.IdType)13 OperationOutcome (org.hl7.fhir.r4.model.OperationOutcome)13 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)13