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Example 6 with Base

use of org.hl7.fhir.r4b.model.Base in project kindling by HL7.

the class Publisher method processProfiles.

@SuppressWarnings("unchecked")
private void processProfiles() throws Exception {
    page.log(" ...process profiles (base)", LogMessageType.Process);
    // first, for each type and resource, we build it's master profile
    for (DefinedCode t : page.getDefinitions().getPrimitives().values()) {
        if (t instanceof PrimitiveType)
            genPrimitiveTypeProfile((PrimitiveType) t);
        else
            genPrimitiveTypeProfile((DefinedStringPattern) t);
    }
    genXhtmlProfile();
    for (TypeDefn t : page.getDefinitions().getTypes().values()) genTypeProfile(t);
    for (TypeDefn t : page.getDefinitions().getInfrastructure().values()) genTypeProfile(t);
    page.log(" ...process profiles (resources)", LogMessageType.Process);
    for (ResourceDefn r : page.getDefinitions().getBaseResources().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (String rn : page.getDefinitions().sortedResourceNames()) {
        ResourceDefn r = page.getDefinitions().getResourceByName(rn);
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (ResourceDefn r : page.getDefinitions().getResourceTemplates().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", true));
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", true));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
    }
    for (ProfiledType pt : page.getDefinitions().getConstraints().values()) {
        genProfiledTypeProfile(pt);
    }
    page.log(" ...process profiles (extensions)", LogMessageType.Process);
    for (StructureDefinition ex : page.getWorkerContext().getExtensionDefinitions()) processExtension(ex);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) {
        // boolean logged = false;
        for (Profile ap : r.getConformancePackages()) {
            // logged = true;
            for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), r);
        }
    }
    page.log(" ...process profiles (packs)", LogMessageType.Process);
    // we have profiles scoped by resources, and stand alone profiles
    for (Profile ap : page.getDefinitions().getPackList()) {
        // page.log(" ...  pack "+ap.getId(), LogMessageType.Process);
        for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), null);
    }
    page.log(" ...process logical models", LogMessageType.Process);
    for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) {
        for (LogicalModel lm : ig.getLogicalModels()) {
            page.log(" ...process logical model " + lm.getId(), LogMessageType.Process);
            if (lm.getDefinition() == null)
                lm.setDefinition(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generateLogicalModel(ig, lm.getResource()));
        }
    }
    // now, validate the profiles
    for (Profile ap : page.getDefinitions().getPackList()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) for (Profile ap : r.getConformancePackages()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    page.log(" ...Check FHIR Path Expressions", LogMessageType.Process);
    StringBuilder b = new StringBuilder();
    FHIRPathEngine fp = new FHIRPathEngine(page.getWorkerContext());
    fp.setHostServices(page.getExpressionResolver());
    for (FHIRPathUsage p : fpUsages) {
        checkExpression(b, fp, p);
    }
    TextFile.stringToFile(b.toString(), Utilities.path(page.getFolders().dstDir, "fhirpaths.txt"));
    checkAllOk();
}
Also used : TypeDefn(org.hl7.fhir.definitions.model.TypeDefn) ProfileGenerator(org.hl7.fhir.definitions.generators.specification.ProfileGenerator) ProfiledType(org.hl7.fhir.definitions.model.ProfiledType) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) FHIRPathEngine(org.hl7.fhir.r5.utils.FHIRPathEngine) ResourceTableGenerator(org.hl7.fhir.definitions.generators.specification.ResourceTableGenerator) ImplementationGuideDefn(org.hl7.fhir.definitions.model.ImplementationGuideDefn) ResourceDefn(org.hl7.fhir.definitions.model.ResourceDefn) TransformerException(javax.xml.transform.TransformerException) IOException(java.io.IOException) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileNotFoundException(java.io.FileNotFoundException) UnsupportedEncodingException(java.io.UnsupportedEncodingException) Profile(org.hl7.fhir.definitions.model.Profile) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode) LogicalModel(org.hl7.fhir.definitions.model.LogicalModel) StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) DefinedStringPattern(org.hl7.fhir.definitions.model.DefinedStringPattern) DefinedCode(org.hl7.fhir.definitions.model.DefinedCode) PrimitiveType(org.hl7.fhir.definitions.model.PrimitiveType) FHIRPathUsage(org.hl7.fhir.definitions.validation.FHIRPathUsage) ConstraintStructure(org.hl7.fhir.definitions.model.ConstraintStructure)

Example 7 with Base

use of org.hl7.fhir.r4b.model.Base in project kindling by HL7.

the class Publisher method makeConformancePack.

private Profile makeConformancePack(ResourceDefn r) {
    Profile result = new Profile("core");
    result.setTitle("Base Profile for " + r.getName());
    return result;
}
Also used : Profile(org.hl7.fhir.definitions.model.Profile)

Example 8 with Base

use of org.hl7.fhir.r4b.model.Base in project kindling by HL7.

the class PageProcessor method cdHeader.

private String cdHeader(String mode) {
    StringBuilder b = new StringBuilder();
    b.append("<ul class=\"nav nav-tabs\">");
    b.append(makeHeaderTab("Contact Detail", "contactdetail.html", mode == null || "base".equals(mode)));
    b.append(makeHeaderTab("Examples", "contactdetail-examples.html", mode == null || "examples".equals(mode)));
    b.append(makeHeaderTab("Detailed Descriptions", "contactdetail-definitions.html", mode == null || "definitions".equals(mode)));
    b.append(makeHeaderTab("Mappings", "contactdetail-mappings.html", mode == null || "mappings".equals(mode)));
    b.append("</ul>\r\n");
    return b.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Example 9 with Base

use of org.hl7.fhir.r4b.model.Base in project kindling by HL7.

the class PageProcessor method extHeader.

private String extHeader(String mode) {
    StringBuilder b = new StringBuilder();
    b.append("<ul class=\"nav nav-tabs\">");
    b.append(makeHeaderTab("Extensibility", "extensibility.html", mode == null || "base".equals(mode)));
    b.append(makeHeaderTab("Defining Extensions", "defining-extensions.html", mode == null || "defining".equals(mode)));
    b.append(makeHeaderTab("Examples", "extensibility-examples.html", mode == null || "examples".equals(mode)));
    b.append(makeHeaderTab("Detailed Descriptions", "extensibility-definitions.html", mode == null || "definitions".equals(mode)));
    b.append(makeHeaderTab("Registry", "extensibility-registry.html", mode == null || "registry".equals(mode)));
    b.append("</ul>\r\n");
    return b.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Example 10 with Base

use of org.hl7.fhir.r4b.model.Base in project kindling by HL7.

the class PageProcessor method ordistHeader.

private String ordistHeader(String mode) {
    StringBuilder b = new StringBuilder();
    b.append("<ul class=\"nav nav-tabs\">");
    b.append(makeHeaderTab("OrderedDistribution", "ordereddistribution.html", mode == null || "base".equals(mode)));
    b.append(makeHeaderTab("Examples", "ordereddistribution-examples.html", mode == null || "examples".equals(mode)));
    b.append(makeHeaderTab("Detailed Descriptions", "ordereddistribution-definitions.html", mode == null || "definitions".equals(mode)));
    b.append(makeHeaderTab("Mappings", "ordereddistribution-mappings.html", mode == null || "mappings".equals(mode)));
    b.append("</ul>\r\n");
    return b.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Aggregations

ArrayList (java.util.ArrayList)324 FHIRException (org.hl7.fhir.exceptions.FHIRException)177 Base (org.hl7.fhir.r4b.model.Base)87 Base (org.hl7.fhir.r5.model.Base)87 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)76 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)70 ValidationMessage (org.hl7.fhir.utilities.validation.ValidationMessage)66 PathEngineException (org.hl7.fhir.exceptions.PathEngineException)64 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)55 NotImplementedException (org.apache.commons.lang3.NotImplementedException)47 Base (org.hl7.fhir.dstu2016may.model.Base)47 UcumException (org.fhir.ucum.UcumException)43 ElementDefinition (org.hl7.fhir.r5.model.ElementDefinition)41 Base (org.hl7.fhir.dstu2.model.Base)40 BigDecimal (java.math.BigDecimal)39 IOException (java.io.IOException)37 ParserBase (org.hl7.fhir.dstu2016may.metamodel.ParserBase)34 FileOutputStream (java.io.FileOutputStream)29 ElementDefinition (org.hl7.fhir.dstu3.model.ElementDefinition)28 StructureDefinition (org.hl7.fhir.dstu3.model.StructureDefinition)28