use of org.hl7.fhir.r4b.model.Narrative in project org.hl7.fhir.core by hapifhir.
the class BundleRenderer method renderDocument.
private boolean renderDocument(XhtmlNode x, ResourceWrapper b, List<BaseWrapper> entries) throws UnsupportedEncodingException, FHIRException, IOException, EOperationOutcome {
// from the spec:
//
// When the document is presented for human consumption, applications SHOULD present the collated narrative portions in order:
// * The subject resource Narrative
// * The Composition resource Narrative
// * The section.text Narratives
ResourceWrapper comp = (ResourceWrapper) entries.get(0).getChildByName("resource").getAsResource();
ResourceWrapper subject = resolveReference(entries, comp.get("subject"));
if (subject != null) {
if (subject.hasNarrative()) {
x.addChildren(subject.getNarrative());
} else {
RendererFactory.factory(subject, context).render(x, subject);
}
}
x.hr();
if (comp.hasNarrative()) {
x.addChildren(comp.getNarrative());
x.hr();
}
List<BaseWrapper> sections = comp.children("section");
for (BaseWrapper section : sections) {
addSection(x, section, 2, false);
}
return false;
}
use of org.hl7.fhir.r4b.model.Narrative in project org.hl7.fhir.core by hapifhir.
the class BundleRenderer method render.
public XhtmlNode render(Bundle b) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
if (b.getType() == BundleType.DOCUMENT) {
if (!b.hasEntry() || !(b.getEntryFirstRep().hasResource() && b.getEntryFirstRep().getResource() instanceof Composition)) {
throw new FHIRException("Invalid document - first entry is not a Composition");
}
XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
renderDocument(x, b);
return x;
} else if ((b.getType() == BundleType.COLLECTION && allEntresAreHistoryProvenance(b))) {
return null;
} else {
XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ROOT, b.getId(), b.getType().toCode()));
int i = 0;
for (BundleEntryComponent be : b.getEntry()) {
i++;
if (be.hasFullUrl())
root.an(makeInternalBundleLink(be.getFullUrl()));
if (be.hasResource() && be.getResource().hasId())
root.an(be.getResource().getResourceType().name() + "_" + be.getResource().getId());
root.hr();
if (be.hasFullUrl()) {
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY_URL, Integer.toString(i), be.getFullUrl()));
} else {
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY, Integer.toString(i)));
}
if (be.hasRequest())
renderRequest(root, be.getRequest());
if (be.hasSearch())
renderSearch(root, be.getSearch());
if (be.hasResponse())
renderResponse(root, be.getResponse());
if (be.hasResource()) {
root.para().addText(formatMessage(RENDER_BUNDLE_RESOURCE, be.getResource().fhirType()));
if (be.hasResource()) {
XhtmlNode xn = null;
if (be.getResource() instanceof DomainResource) {
DomainResource dr = (DomainResource) be.getResource();
xn = dr.getText().getDiv();
}
if (xn == null || xn.isEmpty()) {
ResourceRenderer rr = RendererFactory.factory(be.getResource(), context);
try {
xn = rr.build(be.getResource());
} catch (Exception e) {
xn = makeExceptionXhtml(e, "generating narrative");
}
}
root.blockquote().para().getChildNodes().addAll(checkInternalLinks(b, xn.getChildNodes()));
}
}
}
return root;
}
}
use of org.hl7.fhir.r4b.model.Narrative in project org.hl7.fhir.core by hapifhir.
the class BundleRenderer method render.
@Override
public boolean render(XhtmlNode x, ResourceWrapper b) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
List<BaseWrapper> entries = b.children("entry");
if ("document".equals(b.get("type").primitiveValue())) {
if (entries.isEmpty() || (entries.get(0).has("resource") && !"Composition".equals(entries.get(0).get("resource").fhirType())))
throw new FHIRException("Invalid document '" + b.getId() + "' - first entry is not a Composition ('" + entries.get(0).get("resource").fhirType() + "')");
return renderDocument(x, b, entries);
} else if ("collection".equals(b.get("type").primitiveValue()) && allEntriesAreHistoryProvenance(entries)) {
// nothing
} else {
XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ROOT, b.getId(), b.get("type").primitiveValue()));
int i = 0;
for (BaseWrapper be : entries) {
i++;
if (be.has("fullUrl")) {
root.an(makeInternalBundleLink(be.get("fullUrl").primitiveValue()));
}
if (be.has("resource") && be.getChildByName("resource").getValues().get(0).has("id")) {
root.an(be.get("resource").fhirType() + "_" + be.getChildByName("resource").getValues().get(0).get("id").primitiveValue());
}
root.hr();
if (be.has("fullUrl")) {
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY_URL, Integer.toString(i), be.get("fullUrl").primitiveValue()));
} else {
root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY, Integer.toString(i)));
}
// renderResponse(root, be.getResponse());
if (be.has("resource")) {
root.para().addText(formatMessage(RENDER_BUNDLE_RESOURCE, be.get("resource").fhirType()));
ResourceWrapper rw = be.getChildByName("resource").getAsResource();
XhtmlNode xn = rw.getNarrative();
if (xn == null || xn.isEmpty()) {
ResourceRenderer rr = RendererFactory.factory(rw, context);
try {
xn = rr.render(rw);
} catch (Exception e) {
xn = new XhtmlNode();
xn.para().b().tx("Exception generating narrative: " + e.getMessage());
}
}
root.blockquote().para().addChildren(xn);
}
}
}
return false;
}
use of org.hl7.fhir.r4b.model.Narrative in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method generateByProfile.
private String generateByProfile(Element er, StructureDefinition profile, boolean showCodeDetails) throws IOException, org.hl7.fhir.exceptions.FHIRException {
XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
x.para().b().tx("Generated Narrative" + (showCodeDetails ? " with Details" : ""));
try {
generateByProfile(er, profile, er, profile.getSnapshot().getElement(), profile.getSnapshot().getElement().get(0), getChildrenForPath(profile.getSnapshot().getElement(), er.getLocalName()), x, er.getLocalName(), showCodeDetails);
} catch (Exception e) {
e.printStackTrace();
x.para().b().setAttribute("style", "color: maroon").tx("Exception generating Narrative: " + e.getMessage());
}
inject(er, x, NarrativeStatus.GENERATED);
return new XhtmlComposer(XhtmlComposer.XML).compose(x);
}
use of org.hl7.fhir.r4b.model.Narrative in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerator method renderLeaf.
private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path) throws FHIRException, UnsupportedEncodingException, IOException {
if (ew == null)
return;
Base e = ew.getBase();
if (e instanceof StringType)
x.addText(((StringType) e).getValue());
else if (e instanceof CodeType)
x.addText(((CodeType) e).getValue());
else if (e instanceof IdType)
x.addText(((IdType) e).getValue());
else if (e instanceof Extension)
return;
else if (e instanceof InstantType)
x.addText(((InstantType) e).toHumanDisplay());
else if (e instanceof DateTimeType)
x.addText(((DateTimeType) e).toHumanDisplay());
else if (e instanceof Base64BinaryType)
x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
else if (e instanceof org.hl7.fhir.dstu3.model.DateType)
x.addText(((org.hl7.fhir.dstu3.model.DateType) e).toHumanDisplay());
else if (e instanceof Enumeration) {
Object ev = ((Enumeration<?>) e).getValue();
// todo: look up a display name if there is one
x.addText(ev == null ? "" : ev.toString());
} else if (e instanceof BooleanType)
x.addText(((BooleanType) e).getValue().toString());
else if (e instanceof CodeableConcept) {
renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
} else if (e instanceof Coding) {
renderCoding((Coding) e, x, showCodeDetails);
} else if (e instanceof Annotation) {
renderAnnotation((Annotation) e, x);
} else if (e instanceof Identifier) {
renderIdentifier((Identifier) e, x);
} else if (e instanceof org.hl7.fhir.dstu3.model.IntegerType) {
x.addText(Integer.toString(((org.hl7.fhir.dstu3.model.IntegerType) e).getValue()));
} else if (e instanceof org.hl7.fhir.dstu3.model.DecimalType) {
x.addText(((org.hl7.fhir.dstu3.model.DecimalType) e).getValue().toString());
} else if (e instanceof HumanName) {
renderHumanName((HumanName) e, x);
} else if (e instanceof SampledData) {
renderSampledData((SampledData) e, x);
} else if (e instanceof Address) {
renderAddress((Address) e, x);
} else if (e instanceof ContactPoint) {
renderContactPoint((ContactPoint) e, x);
} else if (e instanceof UriType) {
renderUri((UriType) e, x);
} else if (e instanceof Timing) {
renderTiming((Timing) e, x);
} else if (e instanceof Range) {
renderRange((Range) e, x);
} else if (e instanceof Quantity) {
renderQuantity((Quantity) e, x, showCodeDetails);
} else if (e instanceof Ratio) {
renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
x.tx("/");
renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
} else if (e instanceof Period) {
Period p = (Period) e;
x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
x.tx(" --> ");
x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
} else if (e instanceof Reference) {
Reference r = (Reference) e;
XhtmlNode c = x;
ResourceWithReference tr = null;
if (r.hasReferenceElement()) {
tr = resolveReference(res, r.getReference());
if (!r.getReference().startsWith("#")) {
if (tr != null && tr.getReference() != null)
c = x.ah(tr.getReference());
else
c = x.ah(r.getReference());
}
}
// what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
if (r.hasDisplayElement()) {
c.addText(r.getDisplay());
if (tr != null && tr.getResource() != null) {
c.tx(". Generated Summary: ");
generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
}
} else if (tr != null && tr.getResource() != null) {
generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
} else {
c.addText(r.getReference());
}
} else if (e instanceof Resource) {
return;
} else if (e instanceof ElementDefinition) {
x.tx("todo-bundle");
} else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
if (sd == null)
throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
else
generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails);
}
}
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