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Example 11 with BooleanType

use of org.hl7.fhir.r5.model.BooleanType in project quality-measure-and-cohort-service by Alvearie.

the class CDMMeasureEvaluationTest method testDefinesOnMeasureReport.

@Test
public void testDefinesOnMeasureReport() {
    MeasureReport report = new MeasureReport();
    Map<VersionedIdentifier, Map<String, Object>> expectedResults = setupTestExpectedResultsContext();
    CDMContext defineContext = setupTestDefineContext(expectedResults);
    CDMMeasureEvaluation.addDefineEvaluationToReport(report, defineContext, DefineReturnOptions.ALL);
    assertEquals(5, report.getExtension().size());
    int index = 0;
    for (Entry<VersionedIdentifier, Map<String, Object>> expectedLibraryResults : expectedResults.entrySet()) {
        for (Entry<String, Object> defineResult : expectedLibraryResults.getValue().entrySet()) {
            Extension extension = report.getExtension().get(index++);
            assertEquals(MeasureEvidenceHelper.createEvidenceKey(expectedLibraryResults.getKey(), defineResult.getKey()), extension.getExtensionByUrl(CDMConstants.EVIDENCE_TEXT_URL).getValue().primitiveValue());
            // hack because Type does not return equals for 2 identical objects :(
            Type returnType = extension.getExtensionByUrl(CDMConstants.EVIDENCE_VALUE_URL).getValue();
            if (defineResult.getValue() instanceof Boolean) {
                assertTrue(returnType.isBooleanPrimitive());
                assertEquals(defineResult.getValue(), ((BooleanType) returnType).booleanValue());
            } else if (defineResult.getValue() instanceof String) {
                assertTrue(returnType.isPrimitive());
                assertEquals(defineResult.getValue(), returnType.primitiveValue());
            } else if (defineResult.getValue() instanceof DomainResource) {
                assertTrue(returnType instanceof Reference);
            }
        }
    }
}
Also used : DomainResource(org.hl7.fhir.r4.model.DomainResource) Reference(org.hl7.fhir.r4.model.Reference) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) Extension(org.hl7.fhir.r4.model.Extension) VersionedIdentifier(org.cqframework.cql.elm.execution.VersionedIdentifier) Type(org.hl7.fhir.r4.model.Type) BooleanType(org.hl7.fhir.r4.model.BooleanType) CDMContext(com.ibm.cohort.engine.cqfruler.CDMContext) HashMap(java.util.HashMap) Map(java.util.Map) AbstractMap(java.util.AbstractMap) Test(org.junit.Test)

Example 12 with BooleanType

use of org.hl7.fhir.r5.model.BooleanType in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.

@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    Map<String, Type> measureParameters = new HashMap<>();
    measureParameters.put("base64Param", new Base64BinaryType("AAA"));
    measureParameters.put("booleanParam", new BooleanType(false));
    measureParameters.put("dateParam", new DateType("2020-01-01"));
    measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
    measureParameters.put("decimalParam", new DecimalType(12.0));
    measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
    measureParameters.put("integerParam", new IntegerType(1));
    measureParameters.put("stringParam", new StringType("str"));
    measureParameters.put("timeParam", new TimeType("05:30:00"));
    measureParameters.put("uriParam", new UriType("abcde"));
    measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
    measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
    measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
    measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
    measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
    measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
    List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
    measure.setExtension(parameterExtensions);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(measureParameters.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(measureParameters.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
Also used : Arrays(java.util.Arrays) Date(java.util.Date) PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_VALUE_URL) Range(org.hl7.fhir.r4.model.Range) StringUtils(org.apache.commons.lang3.StringUtils) ConceptParameter(com.ibm.cohort.cql.evaluation.parameters.ConceptParameter) InvalidOperatorArgument(org.opencds.cqf.cql.engine.exception.InvalidOperatorArgument) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) HumanName(org.hl7.fhir.r4.model.HumanName) RatioParameter(com.ibm.cohort.cql.evaluation.parameters.RatioParameter) Map(java.util.Map) StringType(org.hl7.fhir.r4.model.StringType) Assert.fail(org.junit.Assert.fail) ParseException(java.text.ParseException) IntegerType(org.hl7.fhir.r4.model.IntegerType) Patient(org.hl7.fhir.r4.model.Patient) DefineReturnOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions.DefineReturnOptions) IntegerParameter(com.ibm.cohort.cql.evaluation.parameters.IntegerParameter) DateParameter(com.ibm.cohort.cql.evaluation.parameters.DateParameter) DateType(org.hl7.fhir.r4.model.DateType) TimeZone(java.util.TimeZone) CodeParameter(com.ibm.cohort.cql.evaluation.parameters.CodeParameter) Period(org.hl7.fhir.r4.model.Period) MEASURE_PARAMETER_URL(com.ibm.cohort.engine.cdm.CDMConstants.MEASURE_PARAMETER_URL) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Collectors(java.util.stream.Collectors) PARAMETER_DEFAULT_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_DEFAULT_URL) TimeType(org.hl7.fhir.r4.model.TimeType) List(java.util.List) BooleanType(org.hl7.fhir.r4.model.BooleanType) Assert.assertFalse(org.junit.Assert.assertFalse) Coding(org.hl7.fhir.r4.model.Coding) WireMock.getRequestedFor(com.github.tomakehurst.wiremock.client.WireMock.getRequestedFor) Extension(org.hl7.fhir.r4.model.Extension) UriType(org.hl7.fhir.r4.model.UriType) Parameter(com.ibm.cohort.cql.evaluation.parameters.Parameter) 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MeasurePopulationType(org.opencds.cqf.common.evaluation.MeasurePopulationType) InstantType(org.hl7.fhir.r4.model.InstantType) AdministrativeGender(org.hl7.fhir.r4.model.Enumerations.AdministrativeGender) BooleanParameter(com.ibm.cohort.cql.evaluation.parameters.BooleanParameter) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) WireMock.urlEqualTo(com.github.tomakehurst.wiremock.client.WireMock.urlEqualTo) Assert.assertEquals(org.junit.Assert.assertEquals) HashMap(java.util.HashMap) StringType(org.hl7.fhir.r4.model.StringType) TimeType(org.hl7.fhir.r4.model.TimeType) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) UriType(org.hl7.fhir.r4.model.UriType) Coding(org.hl7.fhir.r4.model.Coding) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) Measure(org.hl7.fhir.r4.model.Measure) Ratio(org.hl7.fhir.r4.model.Ratio) InstantType(org.hl7.fhir.r4.model.InstantType) DateType(org.hl7.fhir.r4.model.DateType) BooleanType(org.hl7.fhir.r4.model.BooleanType) 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DecimalType(org.hl7.fhir.r4.model.DecimalType) Library(org.hl7.fhir.r4.model.Library) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.Test)

Example 13 with BooleanType

use of org.hl7.fhir.r5.model.BooleanType in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testBoolean__shouldReturnBooleanParameter.

@Test
public void testBoolean__shouldReturnBooleanParameter() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("boolean");
    BooleanType fhirValue = new BooleanType(true);
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    assertEquals(new BooleanParameter(true), R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : BooleanType(org.hl7.fhir.r4.model.BooleanType) BooleanParameter(com.ibm.cohort.cql.evaluation.parameters.BooleanParameter) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Test(org.junit.Test)

Example 14 with BooleanType

use of org.hl7.fhir.r5.model.BooleanType in project quality-measure-and-cohort-service by Alvearie.

the class R4RestFhirTerminologyProviderTest method inOperationReturnsFalseWhenFhirReturnsFalse.

@Test
public void inOperationReturnsFalseWhenFhirReturnsFalse() throws Exception {
    ValueSetInfo info = new ValueSetInfo();
    info.setId("urn:oid:Test");
    Code code = new Code();
    code.setSystem(TEST_SYSTEM);
    code.setCode(TEST_CODE);
    code.setDisplay(TEST_DISPLAY);
    Parameters parameters = new Parameters();
    parameters.getParameterFirstRep().setName("result").setValue(new BooleanType(false));
    mockFhirResourceRetrieval("/ValueSet/Test/$validate-code?code=" + urlencode(code.getCode()) + "&system=" + urlencode(code.getSystem()) + "&_format=json", parameters);
    boolean result = provider.in(code, info);
    assertFalse(result);
}
Also used : Parameters(org.hl7.fhir.r4.model.Parameters) BooleanType(org.hl7.fhir.r4.model.BooleanType) ValueSetInfo(org.opencds.cqf.cql.engine.terminology.ValueSetInfo) Code(org.opencds.cqf.cql.engine.runtime.Code) Test(org.junit.Test)

Example 15 with BooleanType

use of org.hl7.fhir.r5.model.BooleanType in project quality-measure-and-cohort-service by Alvearie.

the class R4RestFhirTerminologyProviderTest method inOperationReturnsTrueWhenFhirReturnsTrue.

@Test
public void inOperationReturnsTrueWhenFhirReturnsTrue() throws Exception {
    ValueSetInfo info = new ValueSetInfo();
    info.setId("urn:oid:Test");
    Code code = new Code();
    code.setSystem(TEST_SYSTEM);
    code.setCode(TEST_CODE);
    code.setDisplay(TEST_DISPLAY);
    Parameters parameters = new Parameters();
    parameters.getParameterFirstRep().setName("result").setValue(new BooleanType(true));
    mockFhirResourceRetrieval("/ValueSet/Test/$validate-code?code=" + urlencode(code.getCode()) + "&system=" + urlencode(code.getSystem()) + "&_format=json", parameters);
    boolean result = provider.in(code, info);
    assertTrue(result);
}
Also used : Parameters(org.hl7.fhir.r4.model.Parameters) BooleanType(org.hl7.fhir.r4.model.BooleanType) ValueSetInfo(org.opencds.cqf.cql.engine.terminology.ValueSetInfo) Code(org.opencds.cqf.cql.engine.runtime.Code) Test(org.junit.Test)

Aggregations

ArrayList (java.util.ArrayList)59 BooleanType (org.hl7.fhir.r5.model.BooleanType)38 BooleanType (org.hl7.fhir.r4.model.BooleanType)37 FHIRException (org.hl7.fhir.exceptions.FHIRException)33 BooleanType (org.hl7.fhir.r4b.model.BooleanType)27 BooleanType (org.hl7.fhir.dstu3.model.BooleanType)19 NotImplementedException (org.apache.commons.lang3.NotImplementedException)18 Base (org.hl7.fhir.r5.model.Base)17 Test (org.junit.Test)16 StringType (org.hl7.fhir.r4.model.StringType)15 Base (org.hl7.fhir.r4b.model.Base)15 BooleanType (org.hl7.fhir.dstu2016may.model.BooleanType)13 IOException (java.io.IOException)12 HashMap (java.util.HashMap)11 BooleanType (org.hl7.fhir.dstu2.model.BooleanType)11 Base (org.hl7.fhir.dstu2.model.Base)10 StringType (org.hl7.fhir.dstu3.model.StringType)10 StringType (org.hl7.fhir.r5.model.StringType)10 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)9 Coding (org.hl7.fhir.r4.model.Coding)9