Examples with Expression org.hl7.fhir.r5.model.Expression used on opensource projects

Example 76 with Expression

use of org.hl7.fhir.r5.model.Expression in project org.hl7.fhir.core by hapifhir.

the class MeasureValidator method validateMeasureCriteria.

private void validateMeasureCriteria(ValidatorHostContext hostContext, List<ValidationMessage> errors, MeasureContext mctxt, Element crit, NodeStack nsc) {
    String mimeType = crit.getChildValue("language");
    if (!Utilities.noString(mimeType)) {
        // that would be an error elsewhere
        if ("text/cql".equals(mimeType) || "text/cql.identifier".equals(mimeType)) {
            String cqlRef = crit.getChildValue("expression");
            Library lib = null;
            if (rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), mctxt.libraries().size() > 0, I18nConstants.MEASURE_M_CRITERIA_CQL_NO_LIB)) {
                if (cqlRef.contains(".")) {
                    String name = cqlRef.substring(0, cqlRef.indexOf("."));
                    cqlRef = cqlRef.substring(cqlRef.indexOf(".") + 1);
                    for (Library l : mctxt.libraries()) {
                        if (name.equals(l.getName())) {
                            if (rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), lib == null, I18nConstants.MEASURE_M_CRITERIA_CQL_LIB_DUPL)) {
                                lib = l;
                            }
                        }
                    }
                    rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), lib != null, I18nConstants.MEASURE_M_CRITERIA_CQL_LIB_NOT_FOUND, name);
                } else {
                    if (rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), mctxt.libraries().size() == 1, I18nConstants.MEASURE_M_CRITERIA_CQL_ONLY_ONE_LIB)) {
                        lib = mctxt.libraries().get(0);
                    }
                }
            }
            if (lib != null) {
                if (rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), lib.hasUserData(MeasureContext.USER_DATA_ELM), I18nConstants.MEASURE_M_CRITERIA_CQL_NO_ELM, lib.getUrl())) {
                    if (lib.getUserData(MeasureContext.USER_DATA_ELM) instanceof String) {
                        rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), false, I18nConstants.MEASURE_M_CRITERIA_CQL_ERROR, lib.getUrl(), lib.getUserString(MeasureContext.USER_DATA_ELM));
                    } else if (lib.getUserData(MeasureContext.USER_DATA_ELM) instanceof Document) {
                        org.w3c.dom.Element elm = ((Document) lib.getUserData(MeasureContext.USER_DATA_ELM)).getDocumentElement();
                        if (rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), isValidElm(elm), I18nConstants.MEASURE_M_CRITERIA_CQL_ELM_NOT_VALID, lib.getUrl(), cqlRef)) {
                            rule(errors, IssueType.INVALID, crit.line(), crit.col(), nsc.getLiteralPath(), hasCqlTarget(elm, cqlRef), I18nConstants.MEASURE_M_CRITERIA_CQL_NOT_FOUND, lib.getUrl(), cqlRef);
                        }
                    }
                }
            }
        } else if ("text/fhirpath".equals(mimeType)) {
            warning(errors, IssueType.REQUIRED, crit.line(), crit.col(), nsc.getLiteralPath(), false, I18nConstants.MEASURE_M_CRITERIA_UNKNOWN, mimeType);
        } else if ("application/x-fhir-query".equals(mimeType)) {
            warning(errors, IssueType.REQUIRED, crit.line(), crit.col(), nsc.getLiteralPath(), false, I18nConstants.MEASURE_M_CRITERIA_UNKNOWN, mimeType);
        } else {
            warning(errors, IssueType.REQUIRED, crit.line(), crit.col(), nsc.getLiteralPath(), false, I18nConstants.MEASURE_M_CRITERIA_UNKNOWN, mimeType);
        }
    }
}

Example 77 with Expression

use of org.hl7.fhir.r5.model.Expression in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method evaluateDefinition.

/**
 * given an element definition in a profile, what element contains the differentiating fixed
 * for the element, given the differentiating expresssion. The expression is only allowed to
 * use a subset of FHIRPath
 *
 * @param profile
 * @param element
 * @return
 * @throws PathEngineException
 * @throws DefinitionException
 */
public TypedElementDefinition evaluateDefinition(ExpressionNode expr, StructureDefinition profile, TypedElementDefinition element, StructureDefinition source) throws DefinitionException {
    StructureDefinition sd = profile;
    TypedElementDefinition focus = null;
    boolean okToNotResolve = false;
    if (expr.getKind() == Kind.Name) {
        if (element.getElement().hasSlicing()) {
            ElementDefinition slice = pickMandatorySlice(sd, element.getElement());
            if (slice == null) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_NAME_ALREADY_SLICED, element.getElement().getId());
            }
            element = new TypedElementDefinition(slice);
        }
        if (expr.getName().equals("$this")) {
            focus = element;
        } else {
            List<ElementDefinition> childDefinitions;
            childDefinitions = profileUtilities.getChildMap(sd, element.getElement());
            // if that's empty, get the children of the type
            if (childDefinitions.isEmpty()) {
                sd = fetchStructureByType(element, expr);
                if (sd == null) {
                    throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_THIS_CANNOT_FIND, element.getElement().getType().get(0).getProfile(), element.getElement().getId());
                }
                childDefinitions = profileUtilities.getChildMap(sd, sd.getSnapshot().getElementFirstRep());
            }
            for (ElementDefinition t : childDefinitions) {
                if (tailMatches(t, expr.getName()) && !t.hasSlicing()) {
                    // GG: slicing is a problem here. This is for an exetnsion with a fixed value (type slicing)
                    focus = new TypedElementDefinition(t);
                    break;
                }
            }
        }
    } else if (expr.getKind() == Kind.Function) {
        if ("resolve".equals(expr.getName())) {
            if (element.getTypes().size() == 0) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_RESOLVE_NO_TYPE, element.getElement().getId());
            }
            if (element.getTypes().size() > 1) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_RESOLVE_MULTIPLE_TYPES, element.getElement().getId());
            }
            if (!element.getTypes().get(0).hasTarget()) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_RESOLVE_NOT_REFERENCE, element.getElement().getId(), element.getElement().getType().get(0).getCode() + ")");
            }
            if (element.getTypes().get(0).getTargetProfile().size() > 1) {
                throw makeException(expr, I18nConstants.FHIRPATH_RESOLVE_DISCRIMINATOR_NO_TARGET, element.getElement().getId());
            }
            sd = worker.fetchResource(StructureDefinition.class, element.getTypes().get(0).getTargetProfile().get(0).getValue());
            if (sd == null) {
                throw makeException(expr, I18nConstants.FHIRPATH_RESOLVE_DISCRIMINATOR_CANT_FIND, element.getTypes().get(0).getTargetProfile(), element.getElement().getId());
            }
            focus = new TypedElementDefinition(sd.getSnapshot().getElementFirstRep());
        } else if ("extension".equals(expr.getName())) {
            String targetUrl = expr.getParameters().get(0).getConstant().primitiveValue();
            List<ElementDefinition> childDefinitions = profileUtilities.getChildMap(sd, element.getElement());
            for (ElementDefinition t : childDefinitions) {
                if (t.getPath().endsWith(".extension") && t.hasSliceName()) {
                    System.out.println("t: " + t.getId());
                    StructureDefinition exsd = (t.getType() == null || t.getType().isEmpty() || t.getType().get(0).getProfile().isEmpty()) ? null : worker.fetchResource(StructureDefinition.class, t.getType().get(0).getProfile().get(0).getValue());
                    while (exsd != null && !exsd.getBaseDefinition().equals("http://hl7.org/fhir/StructureDefinition/Extension")) {
                        exsd = worker.fetchResource(StructureDefinition.class, exsd.getBaseDefinition());
                    }
                    if (exsd != null && exsd.getUrl().equals(targetUrl)) {
                        if (profileUtilities.getChildMap(sd, t).isEmpty()) {
                            sd = exsd;
                        }
                        focus = new TypedElementDefinition(t);
                        break;
                    }
                }
            }
            if (focus == null) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_CANT_FIND_EXTENSION, expr.toString(), targetUrl, element.getElement().getId(), sd.getUrl());
            }
        } else if ("ofType".equals(expr.getName())) {
            if (!element.getElement().hasType()) {
                throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_TYPE_NONE, element.getElement().getId());
            }
            List<String> atn = new ArrayList<>();
            for (TypeRefComponent tr : element.getTypes()) {
                if (!tr.hasCode()) {
                    throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_NO_CODE, element.getElement().getId());
                }
                atn.add(tr.getCode());
            }
            String stn = expr.getParameters().get(0).getName();
            okToNotResolve = true;
            if ((atn.contains(stn))) {
                if (element.getTypes().size() > 1) {
                    focus = new TypedElementDefinition(element.getElement(), stn);
                } else {
                    focus = element;
                }
            }
        } else {
            throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_NAME, expr.getName());
        }
    } else if (expr.getKind() == Kind.Group) {
        throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_GROUP, expr.toString());
    } else if (expr.getKind() == Kind.Constant) {
        throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_BAD_SYNTAX_CONST);
    }
    if (focus == null) {
        if (okToNotResolve) {
            return null;
        } else {
            throw makeException(expr, I18nConstants.FHIRPATH_DISCRIMINATOR_CANT_FIND, expr.toString(), source.getUrl(), element.getElement().getId(), profile.getUrl());
        }
    } else if (expr.getInner() == null) {
        return focus;
    } else {
        return evaluateDefinition(expr.getInner(), sd, focus, profile);
    }
}

Example 78 with Expression

use of org.hl7.fhir.r5.model.Expression in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode parent, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent) throws FHIRException, UnsupportedEncodingException, IOException, EOperationOutcome {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        renderDateTime(x, e);
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r5.model.DateType) {
        org.hl7.fhir.r5.model.DateType dt = ((org.hl7.fhir.r5.model.DateType) e);
        renderDate(x, dt);
    } else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType) {
        x.addText(((BooleanType) e).getValue().toString());
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept(x, (CodeableConcept) e, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding(x, (Coding) e, showCodeDetails);
    } else if (e instanceof CodeableReference) {
        renderCodeableReference(x, (CodeableReference) e, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation(x, (Annotation) e);
    } else if (e instanceof Identifier) {
        renderIdentifier(x, (Identifier) e);
    } else if (e instanceof org.hl7.fhir.r5.model.IntegerType) {
        if (((org.hl7.fhir.r5.model.IntegerType) e).hasValue()) {
            x.addText(Integer.toString(((org.hl7.fhir.r5.model.IntegerType) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.Integer64Type) {
        if (((org.hl7.fhir.r5.model.Integer64Type) e).hasValue()) {
            x.addText(Long.toString(((org.hl7.fhir.r5.model.Integer64Type) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.DecimalType) {
        x.addText(((org.hl7.fhir.r5.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName(x, (HumanName) e);
    } else if (e instanceof SampledData) {
        renderSampledData(x, (SampledData) e);
    } else if (e instanceof Address) {
        renderAddress(x, (Address) e);
    } else if (e instanceof ContactPoint) {
        renderContactPoint(x, (ContactPoint) e);
    } else if (e instanceof Expression) {
        renderExpression(x, (Expression) e);
    } else if (e instanceof Money) {
        renderMoney(x, (Money) e);
    } else if (e instanceof ContactDetail) {
        ContactDetail cd = (ContactDetail) e;
        if (cd.hasName()) {
            x.tx(cd.getName() + ": ");
        }
        boolean first = true;
        for (ContactPoint c : cd.getTelecom()) {
            if (first)
                first = false;
            else
                x.tx(",");
            renderContactPoint(x, c);
        }
    } else if (e instanceof UriType) {
        renderUri(x, (UriType) e, defn.getPath(), rcontext != null && rcontext.getResourceResource() != null ? rcontext.getResourceResource().getId() : null);
    } else if (e instanceof Timing) {
        renderTiming(x, (Timing) e);
    } else if (e instanceof Range) {
        renderRange(x, (Range) e);
    } else if (e instanceof Quantity) {
        renderQuantity(x, (Quantity) e, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(x, ((Ratio) e).getNumerator(), showCodeDetails);
        x.tx("/");
        renderQuantity(x, ((Ratio) e).getDenominator(), showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        renderPeriod(x, p);
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.getReference() != null && r.getReference().contains("#")) {
            if (containedIds.contains(r.getReference().substring(1))) {
                x.ah(r.getReference()).tx("See " + r.getReference());
            } else {
                // in this case, we render the resource in line
                ResourceWrapper rw = null;
                for (ResourceWrapper t : res.getContained()) {
                    if (r.getReference().substring(1).equals(t.getId())) {
                        rw = t;
                    }
                }
                if (rw == null) {
                    renderReference(res, x, r);
                } else {
                    x.an(rw.getId());
                    ResourceRenderer rr = RendererFactory.factory(rw, context.copy().setAddGeneratedNarrativeHeader(false));
                    rr.render(parent.blockquote(), rw);
                }
            }
        } else {
            renderReference(res, x, r);
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof DataRequirement) {
        DataRequirement p = (DataRequirement) e;
        renderDataRequirement(x, p);
    } else if (e instanceof PrimitiveType) {
        x.tx(((PrimitiveType) e).primitiveValue());
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled - should not be here");
    }
}

Example 79 with Expression

use of org.hl7.fhir.r5.model.Expression in project org.hl7.fhir.core by hapifhir.

the class SearchParameterRenderer method render.

public boolean render(XhtmlNode x, SearchParameter spd) throws IOException, FHIRException, EOperationOutcome {
    x.h2().addText(spd.getName());
    XhtmlNode p = x.para();
    p.tx("Parameter ");
    p.code().tx(spd.getCode());
    p.tx(":");
    p.code().tx(spd.getType().toCode());
    addMarkdown(x, spd.getDescription());
    XhtmlNode tbl = x.table("grid");
    XhtmlNode tr = tbl.tr();
    tr.td().tx(Utilities.pluralize("Resource", spd.getBase().size()));
    XhtmlNode td = tr.td();
    for (CodeType t : spd.getBase()) {
        StructureDefinition sd = context.getWorker().fetchTypeDefinition(t.toString());
        if (sd != null && sd.hasUserData("path")) {
            td.sep(", ").ah(sd.getUserString("path")).tx(t.getCode());
        } else {
            td.sep(", ").tx(t.getCode());
        }
    }
    tr = tbl.tr();
    tr.td().tx("Expression");
    if (spd.hasExpression()) {
        tr.td().code().tx(spd.getExpression());
    } else {
        tr.td().tx("(none)");
    }
    if (spd.hasXpathUsage()) {
        tr = tbl.tr();
        tr.td().tx("Usage");
        tr.td().tx(spd.getXpathUsage().getDisplay());
    }
    if (spd.hasXpath()) {
        tr = tbl.tr();
        tr.td().tx("XPath");
        tr.td().code().tx(spd.getXpath());
    }
    if (spd.hasTarget()) {
        tr = tbl.tr();
        tr.td().tx(Utilities.pluralize("Target Resources", spd.getTarget().size()));
        td = tr.td();
        for (CodeType t : spd.getTarget()) {
            StructureDefinition sd = context.getWorker().fetchTypeDefinition(t.toString());
            if (sd != null && sd.hasUserData("path")) {
                td.sep(", ").ah(sd.getUserString("path")).tx(t.getCode());
            } else {
                td.sep(", ").tx(t.getCode());
            }
        }
    }
    tr = tbl.tr();
    tr.td().tx("Multiples");
    if (spd.getMultipleAnd() && spd.getMultipleOr()) {
        tr.td().tx("The parameter can repeat (and) and can have repeating values (or)");
    } else if (spd.getMultipleOr()) {
        tr.td().tx("The parameter can repeat (and) but each repeat can only have one value");
    } else if (spd.getMultipleAnd()) {
        tr.td().tx("The parameter cannot repeat (and) but the single parameter can have multiple values (or)");
    } else {
        tr.td().tx("The parameter cannot repeat or have multiple values");
    }
    if (spd.hasComparator()) {
        tr = tbl.tr();
        tr.td().tx("Comparators");
        td = tr.td().tx("Allowed: ");
        for (Enumeration<SearchComparator> t : spd.getComparator()) {
            td.sep(", ").tx(t.asStringValue());
        }
    }
    if (spd.hasModifier()) {
        tr = tbl.tr();
        tr.td().tx("Modifiers");
        td = tr.td().tx("Allowed: ");
        for (Enumeration<SearchModifierCode> t : spd.getModifier()) {
            td.sep(", ").tx(t.asStringValue());
        }
    }
    if (spd.hasChain()) {
        tr = tbl.tr();
        tr.td().tx("Chains");
        td = tr.td().tx("Allowed: ");
        for (StringType t : spd.getChain()) {
            td.sep(", ").tx(t.asStringValue());
        }
    }
    if (spd.hasComponent()) {
        x.para().b().tx("Components");
        tbl = x.table("grid");
        for (SearchParameterComponentComponent t : spd.getComponent()) {
            tr = tbl.tr();
            SearchParameter tsp = context.getWorker().fetchResource(SearchParameter.class, t.getDefinition());
            if (tsp != null && tsp.hasUserData("path")) {
                tr.td().ah(tsp.getUserString("path")).tx(tsp.present());
            } else {
                tr.td().tx(t.getDefinition());
            }
            tr.td().code().tx(t.getExpression());
        }
    }
    return false;
}

Example 80 with Expression

use of org.hl7.fhir.r5.model.Expression in project org.hl7.fhir.core by hapifhir.

the class DataRenderer method renderExpression.

private boolean renderExpression(CommaSeparatedStringBuilder c, PrimitiveType p) {
    Extension exp = p.getExtensionByUrl("http://hl7.org/fhir/StructureDefinition/cqf-expression");
    if (exp == null) {
        return false;
    }
    c.append(exp.getValueExpression().getExpression());
    return true;
}