Examples with BaseWrapper org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper used on opensource projects

Example 41 with BaseWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method render.

@Override
public boolean render(XhtmlNode x, ResourceWrapper b) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
    List<BaseWrapper> entries = b.children("entry");
    if ("document".equals(b.get("type").primitiveValue())) {
        if (entries.isEmpty() || (entries.get(0).has("resource") && !"Composition".equals(entries.get(0).get("resource").fhirType())))
            throw new FHIRException("Invalid document '" + b.getId() + "' - first entry is not a Composition ('" + entries.get(0).get("resource").fhirType() + "')");
        return renderDocument(x, b, entries);
    } else if ("collection".equals(b.get("type").primitiveValue()) && allEntriesAreHistoryProvenance(entries)) {
    // nothing
    } else {
        XhtmlNode root = new XhtmlNode(NodeType.Element, "div");
        root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ROOT, b.getId(), b.get("type").primitiveValue()));
        int i = 0;
        for (BaseWrapper be : entries) {
            i++;
            if (be.has("fullUrl")) {
                root.an(makeInternalBundleLink(be.get("fullUrl").primitiveValue()));
            }
            if (be.has("resource") && be.getChildByName("resource").getValues().get(0).has("id")) {
                root.an(be.get("resource").fhirType() + "_" + be.getChildByName("resource").getValues().get(0).get("id").primitiveValue());
            }
            root.hr();
            if (be.has("fullUrl")) {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY_URL, Integer.toString(i), be.get("fullUrl").primitiveValue()));
            } else {
                root.para().addText(formatMessage(RENDER_BUNDLE_HEADER_ENTRY, Integer.toString(i)));
            }
            // renderResponse(root, be.getResponse());
            if (be.has("resource")) {
                root.para().addText(formatMessage(RENDER_BUNDLE_RESOURCE, be.get("resource").fhirType()));
                ResourceWrapper rw = be.getChildByName("resource").getAsResource();
                XhtmlNode xn = rw.getNarrative();
                if (xn == null || xn.isEmpty()) {
                    ResourceRenderer rr = RendererFactory.factory(rw, context);
                    try {
                        xn = rr.render(rw);
                    } catch (Exception e) {
                        xn = new XhtmlNode();
                        xn.para().b().tx("Exception generating narrative: " + e.getMessage());
                    }
                }
                root.blockquote().addChildren(xn);
            }
        }
    }
    return false;
}

Example 42 with BaseWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method displayLeaf.

private boolean displayLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, String name, boolean showCodeDetails) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return false;
    Base e = ew.getBase();
    Map<String, String> displayHints = readDisplayHints(defn);
    if (name.endsWith("[x]"))
        name = name.substring(0, name.length() - 3);
    if (!showCodeDetails && e instanceof PrimitiveType && isDefault(displayHints, ((PrimitiveType) e)))
        return false;
    if (e instanceof StringType) {
        x.addText(name + ": " + ((StringType) e).getValue());
        return true;
    } else if (e instanceof CodeType) {
        x.addText(name + ": " + ((CodeType) e).getValue());
        return true;
    } else if (e instanceof IdType) {
        x.addText(name + ": " + ((IdType) e).getValue());
        return true;
    } else if (e instanceof DateTimeType) {
        x.addText(name + ": " + ((DateTimeType) e).toHumanDisplay());
        return true;
    } else if (e instanceof InstantType) {
        x.addText(name + ": " + ((InstantType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Extension) {
        x.addText("Extensions: todo");
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DateType) {
        x.addText(name + ": " + ((org.hl7.fhir.dstu2.model.DateType) e).toHumanDisplay());
        return true;
    } else if (e instanceof Enumeration) {
        // todo: look up a display name if there is one
        x.addText(((Enumeration<?>) e).getValue().toString());
        return true;
    } else if (e instanceof BooleanType) {
        if (((BooleanType) e).getValue()) {
            x.addText(name);
            return true;
        }
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x, showCodeDetails);
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu2.model.IntegerType) e).getValue()));
        return true;
    } else if (e instanceof org.hl7.fhir.dstu2.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu2.model.DecimalType) e).getValue().toString());
        return true;
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
        return true;
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
        return true;
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
        return true;
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
        return true;
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
        return true;
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
        return true;
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
        return true;
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.addText("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
        return true;
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(name + ": ");
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.addText(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
        return true;
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.hasDisplayElement())
            x.addText(r.getDisplay());
        else if (r.hasReferenceElement()) {
            ResourceWithReference tr = resolveReference(res, r.getReference());
            // getDisplayForReference(tr.getReference()));
            x.addText(tr == null ? r.getReference() : "????");
        } else
            x.addText("??");
        return true;
    } else if (e instanceof Narrative) {
        return false;
    } else if (e instanceof Resource) {
        return false;
    } else if (!(e instanceof Attachment))
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet");
    return false;
}

Example 43 with BaseWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method splitExtensions.

private List<PropertyWrapper> splitExtensions(StructureDefinition profile, List<PropertyWrapper> children) throws UnsupportedEncodingException, IOException, FHIRException {
    List<PropertyWrapper> results = new ArrayList<PropertyWrapper>();
    Map<String, PropertyWrapper> map = new HashMap<String, PropertyWrapper>();
    for (PropertyWrapper p : children) if (p.getName().equals("extension") || p.getName().equals("modifierExtension")) {
        // we're going to split these up, and create a property for each url
        if (p.hasValues()) {
            for (BaseWrapper v : p.getValues()) {
                Extension ex = (Extension) v.getBase();
                String url = ex.getUrl();
                StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
                if (p.getName().equals("modifierExtension") && ed == null)
                    throw new DefinitionException("Unknown modifier extension " + url);
                PropertyWrapper pe = map.get(p.getName() + "[" + url + "]");
                if (pe == null) {
                    if (ed == null) {
                        if (url.startsWith("http://hl7.org/fhir"))
                            throw new DefinitionException("unknown extension " + url);
                        System.out.println("unknown extension " + url);
                        pe = new PropertyWrapperDirect(new Property(p.getName() + "[" + url + "]", p.getTypeCode(), p.getDefinition(), p.getMinCardinality(), p.getMaxCardinality(), ex));
                    } else {
                        ElementDefinition def = ed.getSnapshot().getElement().get(0);
                        pe = new PropertyWrapperDirect(new Property(p.getName() + "[" + url + "]", "Extension", def.getDefinition(), def.getMin(), def.getMax().equals("*") ? Integer.MAX_VALUE : Integer.parseInt(def.getMax()), ex));
                        ((PropertyWrapperDirect) pe).wrapped.setStructure(ed);
                    }
                    results.add(pe);
                } else
                    pe.getValues().add(v);
            }
        }
    } else
        results.add(p);
    return results;
}

Example 44 with BaseWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent, ResourceContext rc) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        if (e.hasPrimitiveValue())
            x.addText(((DateTimeType) e).toHumanDisplay());
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r4.model.DateType)
        x.addText(((org.hl7.fhir.r4.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.r4.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.r4.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.r4.model.DecimalType) {
        x.addText(((org.hl7.fhir.r4.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x, defn.getPath(), rc != null && rc.resourceResource != null ? rc.resourceResource.getId() : null);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference(), rc);
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"), rc);
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"), rc);
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails, indent + 1, rc);
    }
}

Example 45 with BaseWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper in project org.hl7.fhir.core by hapifhir.

the class ResourceRenderer method fetchResource.

protected ResourceWrapper fetchResource(BaseWrapper subject) throws UnsupportedEncodingException, FHIRException, IOException {
    if (context.getResolver() == null)
        return null;
    PropertyWrapper ref = subject.getChildByName("reference");
    if (ref == null || !ref.hasValues()) {
        return null;
    }
    String url = ref.value().getBase().primitiveValue();
    ResourceWithReference rr = context.getResolver().resolve(context, url);
    return rr == null ? null : rr.getResource();
}