use of org.hl7.fhir.r5.renderers.utils.RenderingContext in project org.hl7.fhir.core by hapifhir.
the class ProfileUtilities method generateDescription.
private Cell generateDescription(HierarchicalTableGenerator gen, Row row, ElementDefinition definition, ElementDefinition fallback, boolean used, String baseURL, String url, StructureDefinition profile, String corePath, String imagePath, boolean root, boolean logicalModel, boolean allInvariants, ElementDefinition valueDefn, boolean snapshot, boolean mustSupportOnly, boolean allowSubRows, RenderingContext rc) throws IOException, FHIRException {
Cell c = gen.new Cell();
row.getCells().add(c);
if (used) {
if (logicalModel && ToolingExtensions.hasExtension(profile, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace")) {
if (root) {
c.getPieces().add(gen.new Piece(null, translate("sd.table", "XML Namespace") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(profile, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace"), null));
} else if (!root && ToolingExtensions.hasExtension(definition, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace") && !ToolingExtensions.readStringExtension(definition, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").equals(ToolingExtensions.readStringExtension(profile, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace"))) {
c.getPieces().add(gen.new Piece(null, translate("sd.table", "XML Namespace") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(definition, "http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace"), null));
}
}
if (root) {
if (profile != null && profile.getAbstract()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.addPiece(gen.new Piece(null, "This is an abstract profile", null));
}
}
if (definition.getPath().endsWith("url") && definition.hasFixed()) {
c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "\"" + buildJson(definition.getFixed()) + "\"", null).addStyle("color: darkgreen")));
} else {
if (definition != null && definition.hasShort()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.addPiece(checkForNoChange(definition.getShortElement(), gen.new Piece(null, gt(definition.getShortElement()), null)));
} else if (fallback != null && fallback.hasShort()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.addPiece(gen.new Piece(null, gt(fallback.getShortElement()), null).addStyle("opacity: 0.5"));
}
if (url != null) {
if (!c.getPieces().isEmpty())
c.addPiece(gen.new Piece("br"));
String fullUrl = url.startsWith("#") ? baseURL + url : url;
StructureDefinition ed = context.fetchResource(StructureDefinition.class, url);
String ref = null;
String ref2 = null;
String fixedUrl = null;
if (ed != null) {
String p = ed.getUserString("path");
if (p != null) {
ref = p.startsWith("http:") || igmode ? p : Utilities.pathURL(corePath, p);
}
fixedUrl = getFixedUrl(ed);
if (fixedUrl != null) {
// if its null, we guess that it's not a profiled extension?
if (fixedUrl.equals(url))
fixedUrl = null;
else {
StructureDefinition ed2 = context.fetchResource(StructureDefinition.class, fixedUrl);
if (ed2 != null) {
String p2 = ed2.getUserString("path");
if (p2 != null) {
ref2 = p2.startsWith("http:") || igmode ? p2 : Utilities.pathURL(corePath, p2);
}
}
}
}
}
if (fixedUrl == null) {
c.getPieces().add(gen.new Piece(null, translate("sd.table", "URL") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(ref, fullUrl, null));
} else {
// reference to a profile take on the extension show the base URL
c.getPieces().add(gen.new Piece(null, translate("sd.table", "URL") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(ref2, fixedUrl, null));
c.getPieces().add(gen.new Piece(null, translate("sd.table", " profiled by ") + " ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(ref, fullUrl, null));
}
}
if (definition.hasSlicing()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(gen.new Piece(null, translate("sd.table", "Slice") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, describeSlice(definition.getSlicing()), null));
}
if (!definition.getPath().contains(".") && ToolingExtensions.hasExtension(profile, ToolingExtensions.EXT_BINDING_STYLE)) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(gen.new Piece(null, translate("sd.table", "Binding") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, "This type can be bound to a value set using the ", null));
c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(profile, ToolingExtensions.EXT_BINDING_STYLE), null));
c.getPieces().add(gen.new Piece(null, " binding style", null));
}
if (definition.hasExtension(ToolingExtensions.EXT_XML_NAME)) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
if (definition.hasExtension(ToolingExtensions.EXT_XML_NAMESPACE)) {
c.getPieces().add(gen.new Piece(null, translate("sd.table", "XML") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, definition.getExtensionString(ToolingExtensions.EXT_XML_NAME), null));
c.getPieces().add(gen.new Piece(null, " (", null));
c.getPieces().add(gen.new Piece(null, definition.getExtensionString(ToolingExtensions.EXT_XML_NAMESPACE), null));
c.getPieces().add(gen.new Piece(null, ")", null));
} else {
c.getPieces().add(gen.new Piece(null, translate("sd.table", "XML Element Name") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, definition.getExtensionString(ToolingExtensions.EXT_XML_NAME), null));
}
} else if (definition.hasExtension(ToolingExtensions.EXT_XML_NAMESPACE)) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(gen.new Piece(null, translate("sd.table", "XML Namespace") + ": ", null).addStyle("font-weight:bold"));
c.getPieces().add(gen.new Piece(null, definition.getExtensionString(ToolingExtensions.EXT_XML_NAMESPACE), null));
}
if (definition != null) {
ElementDefinitionBindingComponent binding = null;
if (valueDefn != null && valueDefn.hasBinding() && !valueDefn.getBinding().isEmpty())
binding = makeUnifiedBinding(valueDefn.getBinding(), valueDefn);
else if (definition.hasBinding())
binding = makeUnifiedBinding(definition.getBinding(), definition);
if (binding != null && !binding.isEmpty()) {
if (!c.getPieces().isEmpty())
c.addPiece(gen.new Piece("br"));
BindingResolution br = pkp == null ? makeNullBr(binding) : pkp.resolveBinding(profile, binding, definition.getPath());
c.getPieces().add(checkForNoChange(binding, gen.new Piece(null, translate("sd.table", "Binding") + ": ", null).addStyle("font-weight:bold")));
c.getPieces().add(checkForNoChange(binding.getValueSetElement(), gen.new Piece(br.url == null ? null : Utilities.isAbsoluteUrl(br.url) || !pkp.prependLinks() ? br.url : corePath + br.url, br.display, null)));
if (binding.hasStrength()) {
c.getPieces().add(checkForNoChange(binding.getStrengthElement(), gen.new Piece(null, " (", null)));
c.getPieces().add(checkForNoChange(binding.getStrengthElement(), gen.new Piece(corePath + "terminologies.html#" + binding.getStrength().toCode(), egt(binding.getStrengthElement()), binding.getStrength().getDefinition())));
c.getPieces().add(checkForNoChange(binding.getStrengthElement(), gen.new Piece(null, ")", null)));
}
if (binding.hasDescription() && MarkDownProcessor.isSimpleMarkdown(binding.getDescription())) {
c.getPieces().add(gen.new Piece(null, ": ", null));
c.addMarkdownNoPara(PublicationHacker.fixBindingDescriptions(context, binding.getDescriptionElement()).asStringValue(), checkForNoChange(PublicationHacker.fixBindingDescriptions(context, binding.getDescriptionElement())));
}
AdditionalBindingsRenderer abr = new AdditionalBindingsRenderer(pkp, corePath, profile, definition.getPath(), rc, null);
if (binding.hasExtension(ToolingExtensions.EXT_MAX_VALUESET)) {
abr.seeMaxBinding(ToolingExtensions.getExtension(binding, ToolingExtensions.EXT_MAX_VALUESET));
}
if (binding.hasExtension(ToolingExtensions.EXT_MIN_VALUESET)) {
abr.seeMinBinding(ToolingExtensions.getExtension(binding, ToolingExtensions.EXT_MIN_VALUESET));
}
if (binding.hasExtension(ToolingExtensions.EXT_BINDING_ADDITIONAL)) {
abr.seeAdditionalBindings(binding.getExtensionsByUrl(ToolingExtensions.EXT_BINDING_ADDITIONAL));
}
abr.render(gen, c);
}
for (ElementDefinitionConstraintComponent inv : definition.getConstraint()) {
if (!inv.hasSource() || profile == null || inv.getSource().equals(profile.getUrl()) || allInvariants) {
if (!c.getPieces().isEmpty())
c.addPiece(gen.new Piece("br"));
c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, inv.getKey() + ": ", null).addStyle("font-weight:bold")));
c.getPieces().add(checkForNoChange(inv, gen.new Piece(null, gt(inv.getHumanElement()), null)));
}
}
if ((definition.hasBase() && "*".equals(definition.getBase().getMax())) || (definition.hasMax() && "*".equals(definition.getMax()))) {
if (c.getPieces().size() > 0)
c.addPiece(gen.new Piece("br"));
if (definition.hasOrderMeaning()) {
c.getPieces().add(gen.new Piece(null, "This repeating element order: " + definition.getOrderMeaning(), null));
} else {
// don't show this, this it's important: c.getPieces().add(gen.new Piece(null, "This repeating element has no defined order", null));
}
}
if (definition.hasFixed()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, translate("sd.table", "Fixed Value") + ": ", null).addStyle("font-weight:bold")));
if (!useTableForFixedValues || !allowSubRows || definition.getFixed().isPrimitive()) {
String s = buildJson(definition.getFixed());
String link = null;
if (Utilities.isAbsoluteUrl(s))
link = pkp.getLinkForUrl(corePath, s);
c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(link, s, null).addStyle("color: darkgreen")));
} else {
c.getPieces().add(checkForNoChange(definition.getFixed(), gen.new Piece(null, "As shown", null).addStyle("color: darkgreen")));
genFixedValue(gen, row, definition.getFixed(), snapshot, false, corePath, false);
}
if (isCoded(definition.getFixed()) && !hasDescription(definition.getFixed())) {
Piece p = describeCoded(gen, definition.getFixed());
if (p != null)
c.getPieces().add(p);
}
} else if (definition.hasPattern()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, translate("sd.table", "Required Pattern") + ": ", null).addStyle("font-weight:bold")));
if (!useTableForFixedValues || !allowSubRows || definition.getPattern().isPrimitive())
c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, buildJson(definition.getPattern()), null).addStyle("color: darkgreen")));
else {
c.getPieces().add(checkForNoChange(definition.getPattern(), gen.new Piece(null, "At least the following", null).addStyle("color: darkgreen")));
genFixedValue(gen, row, definition.getPattern(), snapshot, true, corePath, mustSupportOnly);
}
} else if (definition.hasExample()) {
for (ElementDefinitionExampleComponent ex : definition.getExample()) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, translate("sd.table", "Example") + ("".equals("General") ? "" : " " + ex.getLabel()) + ": ", null).addStyle("font-weight:bold")));
c.getPieces().add(checkForNoChange(ex, gen.new Piece(null, buildJson(ex.getValue()), null).addStyle("color: darkgreen")));
}
}
if (definition.hasMaxLength() && definition.getMaxLength() != 0) {
if (!c.getPieces().isEmpty()) {
c.addPiece(gen.new Piece("br"));
}
c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, "Max Length: ", null).addStyle("font-weight:bold")));
c.getPieces().add(checkForNoChange(definition.getMaxLengthElement(), gen.new Piece(null, Integer.toString(definition.getMaxLength()), null).addStyle("color: darkgreen")));
}
if (profile != null) {
for (StructureDefinitionMappingComponent md : profile.getMapping()) {
if (md.hasExtension(ToolingExtensions.EXT_TABLE_NAME)) {
ElementDefinitionMappingComponent map = null;
for (ElementDefinitionMappingComponent m : definition.getMapping()) if (m.getIdentity().equals(md.getIdentity()))
map = m;
if (map != null) {
for (int i = 0; i < definition.getMapping().size(); i++) {
c.addPiece(gen.new Piece("br"));
c.getPieces().add(gen.new Piece(null, ToolingExtensions.readStringExtension(md, ToolingExtensions.EXT_TABLE_NAME) + ": " + map.getMap(), null));
}
}
}
}
}
}
}
}
return c;
}
use of org.hl7.fhir.r5.renderers.utils.RenderingContext in project org.hl7.fhir.core by hapifhir.
the class SnapShotGenerationTests method testGen.
private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
if (!Utilities.noString(test.register)) {
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, null);
pu.setNewSlicingProcessing(true);
for (StructureDefinition sd : test.included) {
pu.setIds(sd, false);
}
for (StructureDefinition sd : test.included) {
if (!TestingUtilities.getSharedWorkerContext().hasResource(StructureDefinition.class, sd.getUrl())) {
TestingUtilities.getSharedWorkerContext().cacheResource(sd);
}
}
StructureDefinition base = TestingUtilities.getSharedWorkerContext().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
if (base != null) {
pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
}
int ec = 0;
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
System.out.println(vm.summary());
ec++;
}
}
if (ec > 0)
throw new FHIRException("register gen failed: " + messages.toString());
}
StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
StructureDefinition output = test.getSource().copy();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, new TestPKP());
pu.setNewSlicingProcessing(test.isNewSliceProcessing());
pu.setThrowException(false);
pu.setDebug(test.isDebug());
pu.setIds(test.getSource(), false);
if (!TestingUtilities.getSharedWorkerContext().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
TestingUtilities.getSharedWorkerContext().loadFromPackage(npm, new TestPackageLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
}
pu.setXver(new XVerExtensionManager(TestingUtilities.getSharedWorkerContext()));
if (test.isSort()) {
List<String> errors = new ArrayList<String>();
int lastCount = output.getDifferential().getElement().size();
pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
if (errors.size() > 0)
throw new FHIRException("Sort failed: " + errors.toString());
}
try {
messages.clear();
pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
List<ValidationMessage> ml = new ArrayList<>();
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
ml.add(vm);
}
}
if (ml.size() > 0) {
throw new FHIRException("Snapshot Generation failed: " + ml.toString());
}
} catch (Throwable e) {
System.out.println("\r\nException: " + e.getMessage());
throw e;
}
if (output.getDifferential().hasElement()) {
RenderingContext rc = new RenderingContext(TestingUtilities.getSharedWorkerContext(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), null, new TestPKP()));
RendererFactory.factory(output, rc).render(output);
}
if (!fail) {
test.output = output;
TestingUtilities.getSharedWorkerContext().cacheResource(output);
File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
if (dst.exists())
dst.delete();
IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
StructureDefinition t1 = test.expected.copy();
t1.setText(null);
StructureDefinition t2 = test.output.copy();
t2.setText(null);
Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
}
}
use of org.hl7.fhir.r5.renderers.utils.RenderingContext in project org.hl7.fhir.core by hapifhir.
the class NarrativeGenerationTests method test.
@ParameterizedTest(name = "{index}: file {0}")
@MethodSource("data")
public void test(String id, TestDetails test) throws Exception {
RenderingContext rc = new RenderingContext(context, null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
rc.setDestDir("");
rc.setHeader(test.isHeader());
rc.setDefinitionsTarget("test.html");
rc.setTerminologyServiceOptions(TerminologyServiceOptions.defaults());
rc.setParser(new TestTypeParser());
// getting timezones correct (well, at least consistent, so tests pass on any computer)
rc.setLocale(new java.util.Locale("en", "AU"));
rc.setTimeZoneId(ZoneId.of("Australia/Sydney"));
rc.setDateTimeFormatString("yyyy-MM-dd'T'HH:mm:ssZZZZZ");
rc.setDateFormatString("yyyy-MM-dd");
rc.setMode(test.technical ? ResourceRendererMode.TECHNICAL : ResourceRendererMode.END_USER);
Resource source;
if (TestingUtilities.findTestResource("r5", "narrative", test.getId() + ".json")) {
source = (Resource) new JsonParser().parse(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".json"));
} else {
source = (Resource) new XmlParser().parse(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".xml"));
}
XhtmlNode x = RendererFactory.factory(source, rc).build(source);
String expected = TextFile.streamToString(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".html"));
String actual = HEADER + new XhtmlComposer(true, true).compose(x) + FOOTER;
String expectedFileName = CompareUtilities.tempFile("narrative", test.getId() + ".expected.html");
String actualFileName = CompareUtilities.tempFile("narrative", test.getId() + ".actual.html");
TextFile.stringToFile(expected, expectedFileName);
TextFile.stringToFile(actual, actualFileName);
String msg = CompareUtilities.checkXMLIsSame(expectedFileName, actualFileName);
Assertions.assertTrue(msg == null, "Output does not match expected: " + msg);
if (test.isMeta()) {
org.hl7.fhir.r5.elementmodel.Element e = Manager.parseSingle(context, TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + ".xml"), FhirFormat.XML);
x = RendererFactory.factory(source, rc).render(new ElementWrappers.ResourceWrapperMetaElement(rc, e));
expected = TextFile.streamToString(TestingUtilities.loadTestResourceStream("r5", "narrative", test.getId() + "-meta.html"));
actual = HEADER + new XhtmlComposer(true, true).compose(x) + FOOTER;
actualFileName = CompareUtilities.tempFile("narrative", test.getId() + "-meta.actual.html");
TextFile.stringToFile(actual, actualFileName);
msg = CompareUtilities.checkXMLIsSame(expectedFileName, actualFileName);
Assertions.assertTrue(msg == null, "Meta output does not match expected: " + msg);
}
}
use of org.hl7.fhir.r5.renderers.utils.RenderingContext in project org.hl7.fhir.core by hapifhir.
the class Scanner method exceptionToOutcome.
protected OperationOutcome exceptionToOutcome(Exception ex) throws IOException, FHIRException, EOperationOutcome {
OperationOutcome op = new OperationOutcome();
op.addIssue().setCode(OperationOutcome.IssueType.EXCEPTION).setSeverity(OperationOutcome.IssueSeverity.FATAL).getDetails().setText(ex.getMessage());
RenderingContext rc = new RenderingContext(getContext(), null, null, "http://hl7.org/fhir", "", null, RenderingContext.ResourceRendererMode.END_USER);
RendererFactory.factory(op, rc).render(op);
return op;
}
use of org.hl7.fhir.r5.renderers.utils.RenderingContext in project org.hl7.fhir.core by hapifhir.
the class ValidatorUtils method messagesToOutcome.
protected static OperationOutcome messagesToOutcome(List<ValidationMessage> messages, SimpleWorkerContext context, FHIRPathEngine fpe) throws IOException, FHIRException, EOperationOutcome {
OperationOutcome op = new OperationOutcome();
for (ValidationMessage vm : filterMessages(messages)) {
try {
fpe.parse(vm.getLocation());
} catch (Exception e) {
System.out.println("Internal error in location for message: '" + e.getMessage() + "', loc = '" + vm.getLocation() + "', err = '" + vm.getMessage() + "'");
}
op.getIssue().add(OperationOutcomeUtilities.convertToIssue(vm, op));
}
if (!op.hasIssue()) {
op.addIssue().setSeverity(OperationOutcome.IssueSeverity.INFORMATION).setCode(OperationOutcome.IssueType.INFORMATIONAL).getDetails().setText(context.formatMessage(I18nConstants.ALL_OK));
}
RenderingContext rc = new RenderingContext(context, null, null, "http://hl7.org/fhir", "", null, RenderingContext.ResourceRendererMode.END_USER);
RendererFactory.factory(op, rc).render(op);
return op;
}
Aggregations