Examples with ResourceDefn org.hl7.fhir.definitions.model.ResourceDefn used on opensource projects

Example 16 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class PageProcessor method produceStructureDefinitionExamples.

private String produceStructureDefinitionExamples(ResourceDefn resource) throws Exception {
    StringBuilder s = new StringBuilder();
    s.append("<div id=\"tabs\">\r\n");
    s.append("<ul>\r\n");
    s.append("  <li><a href=\"#tabs-1\">Base Types</a></li>\r\n");
    s.append("  <li><a href=\"#tabs-2\">Resources</a></li>\r\n");
    s.append("  <li><a href=\"#tabs-3\">Constraints</a></li>\r\n");
    s.append("  <li><a href=\"#tabs-4\">Extensions</a></li>\r\n");
    s.append("  <li><a href=\"#tabs-5\">Examples</a></li>\r\n");
    s.append("</ul>\r\n");
    s.append("<div id=\"tabs-1\">\r\n");
    // base types
    s.append("<table class=\"list\">\r\n");
    genStructureExampleCategory(s, "Abstract Types", "3");
    genStructureExample(s, definitions.getElementLink(), "element.profile", "element", "Element");
    genStructureExample(s, definitions.getBackboneLink(), "backboneelement.profile", "backboneelement", "BackBoneElement");
    genStructureExample(s, "resource.html", "resource.profile", "resource", "Resource");
    genStructureExample(s, "domainresource.html", "domainresource.profile", "domainresource", "DomainResource");
    genStructureExampleCategory(s, "Primitive Types", "3");
    List<String> names = new ArrayList<String>();
    names.addAll(definitions.getPrimitives().keySet());
    Collections.sort(names);
    for (String n : names) {
        DefinedCode dc = definitions.getPrimitives().get(n);
        genStructureExample(s, "datatypes.html#" + dc.getCode(), dc.getCode().toLowerCase() + ".profile", dc.getCode().toLowerCase(), dc.getCode());
    }
    genStructureExampleCategory(s, "Data Types", "3");
    names.clear();
    names.addAll(definitions.getTypes().keySet());
    names.addAll(definitions.getInfrastructure().keySet());
    Collections.sort(names);
    for (String n : names) {
        org.hl7.fhir.definitions.model.TypeDefn t = definitions.getTypes().get(n);
        if (t == null)
            t = definitions.getInfrastructure().get(n);
        genStructureExample(s, getLinkFor("", t.getName()), t.getName().toLowerCase() + ".profile", t.getName().toLowerCase(), t.getName());
    }
    s.append("</table>\r\n");
    s.append("</div>\r\n");
    s.append("<div id=\"tabs-2\">\r\n");
    s.append("<table class=\"list\">\r\n");
    genStructureExampleCategory(s, "Resources", "3");
    for (String n : definitions.sortedResourceNames()) {
        ResourceDefn r = definitions.getResources().get(n);
        genStructureExample(s, r.getName().toLowerCase() + ".html", r.getName().toLowerCase() + ".profile", r.getName().toLowerCase(), r.getName());
    }
    s.append("</table>\r\n");
    s.append("</div>\r\n");
    s.append("<div id=\"tabs-3\">\r\n");
    s.append("<table class=\"list\">\r\n");
    Map<String, ConstraintStructure> constraints = new HashMap<String, ConstraintStructure>();
    for (Profile pp : definitions.getPackList()) {
        for (ConstraintStructure p : pp.getProfiles()) constraints.put(p.getId(), p);
    }
    for (String rn : definitions.sortedResourceNames()) for (Profile ap : definitions.getResourceByName(rn).getConformancePackages()) for (ConstraintStructure p : ap.getProfiles()) constraints.put(p.getId(), p);
    names.clear();
    names.addAll(constraints.keySet());
    Collections.sort(names);
    for (ImplementationGuideDefn ig : definitions.getSortedIgs()) {
        boolean started = false;
        for (String n : names) {
            ConstraintStructure p = constraints.get(n);
            if (ig == p.getUsage()) {
                if (!started) {
                    started = true;
                    genStructureExampleCategory(s, ig.getName(), "3");
                }
                String prefix = ig.isCore() ? "" : ig.getCode() + "/";
                genStructureExample(s, prefix + p.getId().toLowerCase() + ".html", prefix + p.getId().toLowerCase() + ".profile", p.getId().toLowerCase(), p.getTitle());
            }
        }
    }
    s.append("</table>\r\n");
    s.append("</div>\r\n");
    s.append("<div id=\"tabs-4\">\r\n");
    s.append("<table class=\"list\">\r\n");
    names.clear();
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) names.add(sd.getUrl());
    Collections.sort(names);
    for (ImplementationGuideDefn ig : definitions.getSortedIgs()) {
        boolean started = false;
        for (String n : names) {
            StructureDefinition ed = workerContext.fetchResource(StructureDefinition.class, n);
            if (ig.getCode().equals(ToolResourceUtilities.getUsage(ed))) {
                if (!started) {
                    started = true;
                    genStructureExampleCategory(s, ig.getName(), "3");
                }
                String prefix = ig.isCore() ? "" : ig.getCode() + "/";
                genStructureExample(s, prefix + "extension-" + ed.getId().toLowerCase() + ".html", prefix + "extension-" + ed.getId().toLowerCase(), ed.getId().toLowerCase(), ed.getUrl().startsWith("http://hl7.org/fhir/StructureDefinition/") ? ed.getUrl().substring(40) : ed.getUrl(), ed.getName());
            }
        }
    }
    s.append("</table>\r\n");
    s.append("</div>\r\n");
    s.append("<div id=\"tabs-5\">\r\n");
    s.append("<table class=\"list\">\r\n");
    for (Example e : resource.getExamples()) {
        if (e.isRegistered() && Utilities.noString(e.getIg()))
            produceExampleListEntry(s, e, null, null);
    }
    for (Profile p : resource.getConformancePackages()) {
        for (Example e : p.getExamples()) {
            produceExampleListEntry(s, e, p, null);
        }
    }
    for (Profile p : definitions.getPackList()) {
        ImplementationGuideDefn ig = definitions.getIgs().get(p.getCategory());
        for (Example e : p.getExamples()) {
            String rn = e.getResourceName();
            if (Utilities.noString(rn))
                rn = e.getXml().getDocumentElement().getNodeName();
            if (rn.equals(resource.getName()))
                produceExampleListEntry(s, e, p, ig);
        }
    }
    for (ImplementationGuideDefn ig : definitions.getSortedIgs()) {
        if (ig.getIg() != null) {
            for (ImplementationGuideDefinitionResourceComponent res : ig.getIg().getDefinition().getResource()) {
                Example e = (Example) res.getUserData(ToolResourceUtilities.NAME_RES_EXAMPLE);
                if (res.hasExample() && e != null && e.getResourceName().equals(resource.getName()))
                    produceExampleListEntry(s, res, ig);
            }
        }
    }
    s.append("</table>\r\n");
    s.append("</div>\r\n");
    s.append("</div>\r\n");
    s.append("\r\n");
    s.append("<script src=\"external/jquery/jquery.js\"> </script>\r\n");
    s.append("<script src=\"jquery-ui.min.js\"> </script>\r\n");
    s.append("<script>\r\n");
    s.append("try {\r\n");
    s.append("  var currentTabIndex = sessionStorage.getItem('fhir-sdelist-tab-index');\r\n");
    s.append("}\r\n");
    s.append("catch(exception){\r\n");
    s.append("}\r\n");
    s.append("\r\n");
    s.append("if (!currentTabIndex)\r\n");
    s.append("  currentTabIndex = '0';\r\n");
    s.append("  \r\n");
    s.append("$( '#tabs' ).tabs({\r\n");
    s.append("         active: currentTabIndex,\r\n");
    s.append("         activate: function( event, ui ) {\r\n");
    s.append("             var active = $('.selector').tabs('option', 'active');\r\n");
    s.append("             currentTabIndex = ui.newTab.index();\r\n");
    s.append("             document.activeElement.blur();\r\n");
    s.append("             try {\r\n");
    s.append("               sessionStorage.setItem('fhir-sdelist-tab-index', currentTabIndex);\r\n");
    s.append("             }\r\n");
    s.append("             catch(exception){\r\n");
    s.append("             }\r\n");
    s.append("         }\r\n");
    s.append("     });\r\n");
    s.append("</script>\r\n");
    s.append("\r\n");
    return s.toString();
}

Example 17 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class PageProcessor method produceExtensions.

private String produceExtensions(ResourceDefn resource) {
    int count = 0;
    Map<String, StructureDefinition> map = new HashMap<String, StructureDefinition>();
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) {
        boolean inc = false;
        for (StructureDefinitionContextComponent ec : sd.getContext()) {
            if (ec.getType() == ExtensionContextType.ELEMENT) {
                inc = inc || (ec.getExpression().equals(resource.getName()) || ec.getExpression().startsWith(resource.getName() + "."));
            }
            if (inc)
                map.put(sd.getId(), sd);
        }
    }
    StringBuilder b = new StringBuilder();
    for (String s : sorted(map.keySet())) {
        StructureDefinition cs = map.get(s);
        count++;
        b.append("  <tr>\r\n");
        String ref = cs.getUserString("path");
        b.append("    <td><a href=\"").append(ref).append("\">").append(Utilities.escapeXml(cs.getId())).append("</a></td>\r\n");
        b.append("    <td>").append(presentContext(cs, resource.getName())).append("</td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(cs.getName())).append("</td>\r\n");
        Profile ap = (Profile) cs.getUserData("profile");
        if (ap == null)
            b.append("    <td></td>\r\n");
        else {
            ImplementationGuideDefn ig = definitions.getIgs().get(ap.getCategory());
            b.append("    <td>for <a href=\"" + ig.getPrefix() + ap.getId().toLowerCase() + ".html\">" + Utilities.escapeXml(ap.getTitle()) + "</a></td>\r\n");
        }
        b.append(" </tr>\r\n");
    }
    if (count == 0)
        b.append("<tr><td>No Extensions defined for this resource</td></tr>");
    map.clear();
    for (StructureDefinition sd : workerContext.getExtensionDefinitions()) {
        boolean inc = false;
        for (StructureDefinitionContextComponent ec : sd.getContext()) inc = inc || (ec.getExpression().equals("Resource") || ec.getExpression().equals("DomainResource") || ec.getExpression().equals("Any"));
        if (inc)
            map.put(sd.getId(), sd);
    }
    b.append("<tr><td colspan=\"4\">Extensions for all resources or elements</td></tr>");
    for (String s : sorted(map.keySet())) {
        StructureDefinition cs = map.get(s);
        count++;
        b.append("  <tr>\r\n");
        String ref = cs.getUserString("path");
        b.append("    <td colspan=\"2\"><a href=\"").append(ref).append("\">").append(Utilities.escapeXml(cs.getId())).append("</a></td>\r\n");
        b.append("    <td>").append(Utilities.escapeXml(cs.getName())).append("</td>\r\n");
        Profile ap = (Profile) cs.getUserData("profile");
        if (ap == null)
            b.append("    <td></td>\r\n");
        else {
            ImplementationGuideDefn ig = definitions.getIgs().get(ap.getCategory());
            b.append("    <td>for <a href=\"" + ig.getPrefix() + ap.getId() + ".html\">" + Utilities.escapeXml(ap.getTitle()) + "</a></td>\r\n");
        }
        b.append(" </tr>\r\n");
    }
    return b.toString();
}

Example 18 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class Publisher method buildSearchDefinition.

private void buildSearchDefinition(ResourceDefn rd, SearchParameterDefn spd) throws Exception {
    StructureDefinition p = new StructureDefinition();
    p.setFhirVersion(page.getVersion());
    p.setKind(StructureDefinitionKind.RESOURCE);
    p.setAbstract(true);
    p.setPublisher("Health Level Seven International (" + rd.getWg() + ")");
    p.setName(rd.getName());
    p.setVersion(page.getVersion().toCode());
    p.setType(rd.getName());
    p.addContact().addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
    SearchParameter sp = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).makeSearchParam(p, rd.getName() + "-" + spd.getCode(), rd.getName(), spd, rd);
    spd.setResource(sp);
}

Example 19 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class Publisher method processProfile.

private void processProfile(Profile ap, ConstraintStructure profile, String filename, ResourceDefn baseResource) throws Exception {
    // create StructureDefinition structures if needed (create differential definitions from spreadsheets)
    if (profile.getResource() == null) {
        StructureDefinition p = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(ap, profile, profile.getDefn(), profile.getId(), profile.getUsage(), page.getValidationErrors(), baseResource);
        p.setUserData("pack", ap);
        profile.setResource(p);
        if (profile.getResourceInfo() != null) {
            profile.getResourceInfo().setUserData(ToolResourceUtilities.RES_ACTUAL_RESOURCE, p);
        }
        if (page.getProfiles().has(p.getUrl()))
            throw new Exception("Duplicate Profile URL " + p.getUrl());
        page.getProfiles().see(p, page.packageInfo());
    } else {
        profile.getResource().setUserData("pack", ap);
        sortProfile(profile.getResource());
        for (ElementDefinition ed : profile.getResource().getDifferential().getElement()) if (!ed.hasId())
            throw new Exception("Missing ID");
        // special case: if the profile itself doesn't claim a date, it's date is the date of this publication
        if (!profile.getResource().hasDate())
            profile.getResource().setDate(page.getGenDate().getTime());
        if (profile.getResource().hasBaseDefinition() && !profile.getResource().hasSnapshot()) {
            // cause it probably doesn't, coming from the profile directly
            StructureDefinition base = getSnapShotForProfile(profile.getResource().getBaseDefinition());
            new ProfileUtilities(page.getWorkerContext(), page.getValidationErrors(), page).generateSnapshot(base, profile.getResource(), profile.getResource().getBaseDefinition().split("#")[0], "http://hl7.org/fhir", profile.getResource().getName());
        }
        if (page.getProfiles().has(profile.getResource().getUrl()))
            throw new Exception("Duplicate Profile URL " + profile.getResource().getUrl());
        System.out.println("register " + profile.getResource().getUrl());
        page.getProfiles().see(profile.getResource(), page.packageInfo());
    }
    if (!Utilities.noString(filename))
        profile.getResource().setUserData("filename", filename + ".html");
    if (Utilities.noString(profile.getResource().getUserString("path"))) {
        String path = "";
        ImplementationGuideDefn ig = page.getDefinitions().getUsageIG(ap.getCategory(), "processProfile");
        if (ig != null && !ig.isCore())
            path = ig.getCode() + File.separator;
        profile.getResource().setUserData("path", path + filename + ".html");
    }
}

Example 20 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class Publisher method checkExampleLinks.

private void checkExampleLinks(List<ValidationMessage> errors, ResourceDefn r) throws Exception {
    for (Example e : r.getExamples()) {
        try {
            if (e.getXml() != null) {
                List<ExampleReference> refs = new ArrayList<ExampleReference>();
                listLinks(e.getXml().getDocumentElement(), refs);
                for (ExampleReference ref : refs) {
                    if (!ref.isExempt() && !resolveLink(ref, e)) {
                        String path = ref.getPath().replace("/f:", ".").substring(1) + " (example " + e.getTitle() + ")";
                        if (ref.hasType() && page.getDefinitions().hasResource(ref.getType())) {
                            errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve example reference to " + ref.getRef() + " in " + e.getTitle() + " (Possible Ids: " + listTargetIds(ref.getType()) + ")", "Unable to resolve example reference to " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a> (Possible Ids: " + listTargetIds(ref.getType()) + ")", IssueSeverity.INFORMATION));
                        } else {
                            String regex = "((http|https)://([A-Za-z0-9\\\\\\/\\.\\:\\%\\$])*)?(" + page.pipeResources() + ")\\/" + FormatUtilities.ID_REGEX + "(\\/_history\\/" + FormatUtilities.ID_REGEX + ")?";
                            if (ref.getRef().matches(regex)) {
                                errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve example reference " + ref.getRef() + " in " + e.getTitle(), "Unable to resolve example reference " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a>", IssueSeverity.INFORMATION));
                            } else {
                                errors.add(new ValidationMessage(Source.ExampleValidator, IssueType.BUSINESSRULE, -1, -1, path, "Unable to resolve invalid example reference " + ref.getRef() + " in " + e.getTitle(), "Unable to resolve invalid example reference " + ref.getRef() + " in <a href=\"" + e.getTitle() + ".html" + "\">" + e.getTitle() + "</a>", IssueSeverity.WARNING));
                            }
                        }
                    // System.out.println("unresolved reference "+ref.getRef()+" at "+path);
                    }
                }
            }
        } catch (Exception ex) {
            throw new Exception("Error checking example " + e.getTitle() + ":" + ex.getMessage(), ex);
        }
    }
}