Examples with ResourceDefn org.hl7.fhir.definitions.model.ResourceDefn used on opensource projects

Example 36 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class ExampleInspector method testSearchParameters.

private void testSearchParameters(org.w3c.dom.Element xe, String rn, boolean inBundle) throws FHIRException {
    ResourceDefn r = definitions.getResources().get(rn);
    for (SearchParameterDefn sp : r.getSearchParams().values()) {
        if (!sp.isXPathDone() && !Utilities.noString(sp.getXPath())) {
            try {
                sp.setXPathDone(true);
                NamespaceContext context = new NamespaceContextMap("f", "http://hl7.org/fhir", "h", "http://www.w3.org/1999/xhtml");
                XPathFactory factory = XPathFactory.newInstance();
                XPath xpath = factory.newXPath();
                xpath.setNamespaceContext(context);
                XPathExpression expression;
                expression = inBundle ? xpath.compile("/f:Bundle/f:entry/f:resource/" + sp.getXPath()) : xpath.compile("/" + sp.getXPath());
                NodeList resultNodes = (NodeList) expression.evaluate(xe, XPathConstants.NODESET);
                if (resultNodes.getLength() > 0)
                    sp.setWorks(true);
            } catch (Exception e1) {
                throw new FHIRException("Xpath \"" + sp.getXPath() + "\" execution failed: " + e1.getMessage(), e1);
            }
        }
    }
}

Example 37 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class BookMaker method addContent.

private void addContent(XhtmlNode body) throws Exception {
    List<String> list = new ArrayList<String>();
    loadResources(list, page.getDefinitions().getResources().keySet());
    XhtmlNode e = body.getElement("contents");
    XhtmlNode div = body.addTag(body.getChildNodes().indexOf(e), "div");
    body.getChildNodes().remove(e);
    List<String> links = new ArrayList<String>();
    LevelCounter lvl = new LevelCounter();
    lvl.l1 = 0;
    for (Navigation.Category s : page.getNavigation().getCategories()) {
        lvl.l1++;
        // div.addTag("div").setAttribute("class", "page-break");
        XhtmlNode divS = div.addTag("div");
        divS.attribute("class", "section");
        XhtmlNode h1 = divS.addTag("h1");
        h1.addText(Integer.toString(lvl.l1) + ": " + s.getName());
        addPageContent(lvl, divS, s.getLink(), s.getName());
        links.add(s.getLink());
        lvl.l2 = 0;
        for (Navigation.Entry n : s.getEntries()) {
            lvl.l2++;
            lvl.l3 = 0;
            if (n.getLink() != null) {
                if (n.getLink().equals("[codes]")) {
                    lvl.l2--;
                    List<String> names = new ArrayList<String>();
                    throw new Error("fix this");
                // for (BindingSpecification bs : page.getDefinitions().getBindings().values()) {
                // if (bs.getBinding() == Binding.CodeList)
                // names.add(bs.getReference());
                // }
                // Collections.sort(names);
                // for (String l : names) {
                // addPageContent(lvl, divS, l.substring(1), page.getDefinitions().getBindingByReference(l).getName());
                // //              links.add(l.substring(1));
                // }
                } else {
                    addPageContent(lvl, divS, n.getLink(), n.getName());
                    links.add(n.getLink());
                }
            }
            for (Navigation.Entry g : n.getEntries()) {
                if (g.getLink() != null) {
                    addPageContent(lvl, divS, g.getLink(), g.getName());
                    links.add(g.getLink());
                }
            }
        }
        if (s.getEntries().size() == 0 && s.getLink().equals("resourcelist")) {
            for (String rn : list) {
                if (!links.contains(rn.toLowerCase())) {
                    lvl.l2++;
                    lvl.l3 = 0;
                    ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                    addPageContent(lvl, divS, rn.toLowerCase(), r.getName());
                }
            }
        }
        if (s.getLink().equals("page") && s.getName().equals("Examples")) {
            for (String rn : list) {
                lvl.l2++;
                lvl.l3 = 0;
                ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                addPageContent(lvl, divS, rn.toLowerCase() + "Ex", r.getName());
            }
        }
        if (s.getLink().equals("page") && s.getName().equals("Detailed Descriptions")) {
            for (String rn : list) {
                lvl.l2++;
                lvl.l3 = 0;
                ResourceDefn r = page.getDefinitions().getResourceByName(rn);
                addPageContent(lvl, divS, rn.toLowerCase() + "Defn", r.getName());
            }
        }
    }
}

Example 38 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class OldSpreadsheetParser method parseProfileSheet.

private ConstraintStructure parseProfileSheet(Definitions definitions, Profile ap, String n, List<String> namedSheets, boolean published, String usage, List<ValidationMessage> issues, WorkGroup wg, String fmm) throws Exception {
    Sheet sheet;
    ResourceDefn resource = new ResourceDefn();
    sheet = loadSheet(n + "-Inv");
    Map<String, Invariant> invariants = null;
    if (sheet != null) {
        invariants = readInvariants(sheet, n, n + "-Inv");
    } else {
        invariants = new HashMap<String, Invariant>();
    }
    sheet = loadSheet(n);
    if (sheet == null)
        throw new Exception("The StructureDefinition referred to a tab by the name of '" + n + "', but no tab by the name could be found");
    for (int row = 0; row < sheet.rows.size(); row++) {
        ElementDefn e = processLine(resource, sheet, row, invariants, true, ap, row == 0);
        if (e != null)
            for (TypeRef t : e.getTypes()) {
                if (t.getProfile() != null && !t.getName().equals("Extension") && t.getProfile().startsWith("#")) {
                    if (!namedSheets.contains(t.getProfile().substring(1)))
                        namedSheets.add(t.getProfile().substring(1));
                }
            }
    }
    sheet = loadSheet(n + "-Extensions");
    if (sheet != null) {
        int row = 0;
        while (row < sheet.rows.size()) {
            if (sheet.getColumn(row, "Code").startsWith("!"))
                row++;
            else
                row = processExtension(resource.getRoot().getElementByName(definitions, "extensions", true, false), sheet, row, definitions, ap.metadata("extension.uri"), ap, issues, invariants, wg);
        }
    }
    sheet = loadSheet(n + "-Search");
    if (sheet != null) {
        readSearchParams(resource, sheet, true);
    }
    if (invariants != null) {
        for (Invariant inv : invariants.values()) {
            if (Utilities.noString(inv.getContext()))
                throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " has no context");
            else {
                ElementDefn ed = findContext(resource.getRoot(), inv.getContext(), "Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " Context");
                // TODO: Need to resolve context based on element name, not just path
                if (ed.getName().endsWith("[x]") && !inv.getContext().endsWith("[x]"))
                    inv.setFixedName(inv.getContext().substring(inv.getContext().lastIndexOf(".") + 1));
                ed.getInvariants().put(inv.getId(), inv);
                if (Utilities.noString(inv.getXpath())) {
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") has no XPath statement");
                } else if (inv.getXpath().contains("\""))
                    throw new Exception("Type " + resource.getRoot().getName() + " Invariant " + inv.getId() + " (" + inv.getEnglish() + ") contains a \" character");
            // if (Utilities.noString(inv.getExpression()))
            // throw new Exception("Type "+resource.getRoot().getName()+" Invariant "+inv.getId()+" ("+inv.getEnglish()+") has no Expression statement (in FHIRPath format)");
            }
        }
    }
    resource.getRoot().setProfileName(n);
    if (n.toLowerCase().equals(ap.getId()))
        throw new Exception("Duplicate Profile Name: Package id " + ap.getId() + " and profile id " + n.toLowerCase() + " are the same");
    if (profileIds.containsKey(n.toLowerCase()))
        throw new Exception("Duplicate Profile Name: " + n.toLowerCase() + " in " + ap.getId() + ", already registered in " + profileIds.get(n.toLowerCase()).getOwner());
    ConstraintStructure p = new ConstraintStructure(n.toLowerCase(), resource.getRoot().getProfileName(), resource, ig != null ? ig : definitions.getUsageIG(usage, "Parsing " + name), wg, fmm, Utilities.existsInList(ap.metadata("Experimental"), "y", "Y", "true", "TRUE", "1"));
    p.setOwner(ap.getId());
    profileIds.put(n.toLowerCase(), p);
    return p;
}

Example 39 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class OldSpreadsheetParser method readExamples.

private void readExamples(ResourceDefn defn, Sheet sheet) throws Exception {
    if (sheet != null) {
        for (int row = 0; row < sheet.rows.size(); row++) {
            String name = sheet.getColumn(row, "Name");
            if (name != null && !name.equals("") && !name.startsWith("!")) {
                String id = sheet.getColumn(row, "Identity");
                if (id == null || id.equals(""))
                    throw new Exception("Example " + name + " has no identity parsing " + this.name);
                String desc = sheet.getColumn(row, "Description");
                if (desc == null || desc.equals(""))
                    throw new Exception("Example " + name + " has no description parsing " + this.name);
                String filename = sheet.getColumn(row, "Filename");
                if (filename.startsWith(defn.getName().toLowerCase() + "-examples."))
                    throw new Exception("Cannot name an example file " + filename);
                File file = new CSFile(folder + filename);
                String type = sheet.getColumn(row, "Type");
                if (!file.exists() && !("tool".equals(type) || isSpecialType(type)))
                    throw new Exception("Example " + name + " file '" + file.getAbsolutePath() + "' not found parsing " + this.name);
                List<Example> list = defn.getExamples();
                String pn = sheet.getColumn(row, "Profile");
                if (!Utilities.noString(pn) && !pn.startsWith("!")) {
                    Profile ap = null;
                    for (Profile r : defn.getConformancePackages()) {
                        if (r.getTitle().equals(pn))
                            ap = r;
                    }
                    if (ap == null)
                        throw new Exception("Example " + name + " profile '" + pn + "' not found parsing " + this.name);
                    else
                        list = ap.getExamples();
                }
                ExampleType etype = parseExampleType(type, row);
                list.add(new Example(name, id, desc, file, parseBoolean(sheet.getColumn(row, "Registered"), row, true), etype, isAbstract));
            }
        }
    }
    if (defn.getExamples().size() == 0) {
        File file = new CSFile(folder + title + "-example.xml");
        if (!file.exists() && !isAbstract)
            throw new Exception("Example (file '" + file.getAbsolutePath() + "') not found parsing " + this.name);
        if (file.exists())
            defn.getExamples().add(new Example("General", "example", "Example of " + title, file, true, ExampleType.XmlFile, isAbstract));
    }
}

Example 40 with ResourceDefn

use of org.hl7.fhir.definitions.model.ResourceDefn in project kindling by HL7.

the class OldSpreadsheetParser method resolveElementReferences.

private void resolveElementReferences(ResourceDefn parent, ElementDefn root) throws Exception {
    for (TypeRef ref : root.getTypes()) {
        if (ref.isElementReference()) {
            ElementDefn referredElement = parent.getRoot().getElementByName(definitions, ref.getName().substring(1), true, false, null);
            if (referredElement == null)
                throw new Exception("Element reference " + ref.getName() + " cannot be found in type " + parent.getName());
            if (referredElement.getDeclaredTypeName() == null)
                throw new Exception("Element reference " + ref.getName() + " in " + parent.getName() + " refers to an anonymous group of elements. Please specify names with the '=<name>' construct in the typename column.");
            ref.setResolvedTypeName(referredElement.getDeclaredTypeName());
        }
    }
    for (ElementDefn element : root.getElements()) {
        resolveElementReferences(parent, element);
    }
}