Examples with DataElement org.hl7.fhir.dstu2.model.DataElement used on opensource projects

Example 11 with DataElement

use of org.hl7.fhir.dstu2.model.DataElement in project org.hl7.fhir.core by hapifhir.

the class TurtleTests method test_dataelement_labtestmaster_example.

@Test
public void test_dataelement_labtestmaster_example() throws FileNotFoundException, IOException, Exception {
    System.out.println("dataelement-labtestmaster-example.ttl");
    new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\dataelement-labtestmaster-example.ttl"));
}

Example 12 with DataElement

use of org.hl7.fhir.dstu2.model.DataElement in project FAAAST-Service by FraunhoferIOSB.

the class AasServiceNodeManager method doRemoveFromMaps.

/**
 * Removes the given SubmodelElement from the maps.
 *
 * @param element The desired SubmodelElement
 * @param reference The reference to the desired SubmodelElement
 * @param referable The corresponding referable
 */
@SuppressWarnings("java:S2629")
private void doRemoveFromMaps(AASSubmodelElementType element, Reference reference, Referable referable) {
    try {
        LOG.debug("doRemoveFromMaps: remove SubmodelElement {}", AasUtils.asString(reference));
        if (submodelElementOpcUAMap.containsKey(reference)) {
            submodelElementOpcUAMap.remove(reference);
            LOG.debug("doRemoveFromMaps: remove SubmodelElement from submodelElementOpcUAMap: {}", AasUtils.asString(reference));
        }
        if (element instanceof AASPropertyType) {
            AASPropertyType prop = (AASPropertyType) element;
            if (submodelElementAasMap.containsKey(prop.getValueNode().getNodeId())) {
                submodelElementAasMap.remove(prop.getValueNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Property NodeId {}", prop.getValueNode().getNodeId());
            }
        } else if (element instanceof AASRangeType) {
            AASRangeType range = (AASRangeType) element;
            if (submodelElementAasMap.containsKey(range.getMinNode().getNodeId())) {
                submodelElementAasMap.remove(range.getMinNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Range Min NodeId {}", range.getMinNode().getNodeId());
            }
            if (submodelElementAasMap.containsKey(range.getMaxNode().getNodeId())) {
                submodelElementAasMap.remove(range.getMaxNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Range Max NodeId {}", range.getMaxNode().getNodeId());
            }
        } else if (element instanceof AASOperationType) {
            AASOperationType oper = (AASOperationType) element;
            if (submodelElementAasMap.containsKey(oper.getOperationNode().getNodeId())) {
                submodelElementAasMap.remove(oper.getOperationNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Operation NodeId {}", oper.getOperationNode().getNodeId());
            }
        } else if (element instanceof AASBlobType) {
            AASBlobType blob = (AASBlobType) element;
            if (submodelElementAasMap.containsKey(blob.getValueNode().getNodeId())) {
                submodelElementAasMap.remove(blob.getValueNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Blob NodeId {}", blob.getValueNode().getNodeId());
            }
        } else if (element instanceof AASMultiLanguagePropertyType) {
            AASMultiLanguagePropertyType mlp = (AASMultiLanguagePropertyType) element;
            if (submodelElementAasMap.containsKey(mlp.getValueNode().getNodeId())) {
                submodelElementAasMap.remove(mlp.getValueNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove AASMultiLanguageProperty NodeId {}", mlp.getValueNode().getNodeId());
            }
        } else if (element instanceof AASReferenceElementType) {
            AASReferenceElementType refElem = (AASReferenceElementType) element;
            NodeId nid = refElem.getValueNode().getKeysNode().getNodeId();
            if (submodelElementAasMap.containsKey(nid)) {
                submodelElementAasMap.remove(nid);
                LOG.debug("doRemoveFromMaps: remove AASReferenceElement NodeId {}", nid);
            }
        } else if (element instanceof AASRelationshipElementType) {
            AASRelationshipElementType relElem = (AASRelationshipElementType) element;
            NodeId nid = relElem.getFirstNode().getKeysNode().getNodeId();
            if (submodelElementAasMap.containsKey(nid)) {
                submodelElementAasMap.remove(nid);
                LOG.debug("doRemoveFromMaps: remove AASRelationshipElement First NodeId {}", nid);
            }
            nid = relElem.getSecondNode().getKeysNode().getNodeId();
            if (submodelElementAasMap.containsKey(nid)) {
                submodelElementAasMap.remove(nid);
                LOG.debug("doRemoveFromMaps: remove AASRelationshipElement Second NodeId {}", nid);
            }
            if ((relElem instanceof AASAnnotatedRelationshipElementType) && (referable instanceof AnnotatedRelationshipElement)) {
                AnnotatedRelationshipElement annRelElem = (AnnotatedRelationshipElement) referable;
                for (DataElement de : annRelElem.getAnnotations()) {
                    doRemoveFromMaps(reference, de);
                }
            }
        } else if (element instanceof AASEntityType) {
            AASEntityType ent = (AASEntityType) element;
            if ((ent.getGlobalAssetIdNode() != null) && (ent.getGlobalAssetIdNode().getKeysNode() != null)) {
                NodeId nid = ent.getGlobalAssetIdNode().getKeysNode().getNodeId();
                if (submodelElementAasMap.containsKey(nid)) {
                    submodelElementAasMap.remove(nid);
                    LOG.debug("doRemoveFromMaps: remove Entity GlobalAssetId NodeId {}", nid);
                }
            }
            if (submodelElementAasMap.containsKey(ent.getEntityTypeNode().getNodeId())) {
                submodelElementAasMap.remove(ent.getEntityTypeNode().getNodeId());
                LOG.debug("doRemoveFromMaps: remove Entity EntityType NodeId {}", ent.getEntityTypeNode().getNodeId());
            }
        } else if (referable instanceof SubmodelElementCollection) {
            SubmodelElementCollection sec = (SubmodelElementCollection) referable;
            for (SubmodelElement se : sec.getValues()) {
                doRemoveFromMaps(reference, se);
            }
        }
    // Capability and File are currently not relevant here
    } catch (Exception ex) {
        LOG.error("doRemoveFromMaps Exception", ex);
        throw ex;
    }
}

Example 13 with DataElement

use of org.hl7.fhir.dstu2.model.DataElement in project FAAAST-Service by FraunhoferIOSB.

the class AasServiceNodeManager method createAnnotatedRelationshipElement.

/**
 * Creates an Annotated Relationship Element.
 *
 * @param aasRelElem The AAS Annotated Relationship Element
 * @param submodel The corresponding Submodel as parent object of the data element
 * @param relElemRef The AAS reference to the AnnotatedRelationshipElement
 * @param nodeId The desired NodeId for the node to be created
 * @return The create UA Annotated Relationship Element
 * @throws StatusException If the operation fails
 */
private AASRelationshipElementType createAnnotatedRelationshipElement(AnnotatedRelationshipElement aasRelElem, Submodel submodel, Reference relElemRef, NodeId nodeId) throws StatusException {
    AASRelationshipElementType retval = null;
    try {
        AASAnnotatedRelationshipElementType relElemNode = createInstance(AASAnnotatedRelationshipElementType.class, nodeId, UaQualifiedName.from(opc.i4aas.ObjectTypeIds.AASAnnotatedRelationshipElementType.getNamespaceUri(), aasRelElem.getIdShort()).toQualifiedName(getNamespaceTable()), LocalizedText.english(aasRelElem.getIdShort()));
        // Annotations
        for (DataElement de : aasRelElem.getAnnotations()) {
            addAasDataElement(relElemNode.getAnnotationNode(), de, submodel, relElemRef, false);
        }
        retval = relElemNode;
    } catch (Exception ex) {
        LOG.error("createAnnotatedRelationshipElement Exception", ex);
        throw ex;
    }
    return retval;
}

Example 14 with DataElement

use of org.hl7.fhir.dstu2.model.DataElement in project kindling by HL7.

the class ProfileGenerator method generateElementDefinition.

private void generateElementDefinition(StructureDefinition source, ElementDefinition ed, ElementDefinition parent) throws Exception {
    String id = ed.getPath().replace("[x]", "X");
    if (id.length() > 64)
        id = id.substring(0, 64);
    if (!id.contains("."))
        // throw new Exception("Don't generate data element for root of resources or types");
        return;
    if (!ed.hasType())
        // throw new Exception("Don't generate data element for reference elements");
        return;
    if (Utilities.existsInList(ed.getType().get(0).getCode(), "Element", "BackboneElement"))
        // throw new Exception("Don't generate data element for elements that are not leaves");
        return;
    StructureDefinition de;
    if (des.containsKey(id)) {
        de = des.get("de-" + id);
        // do it again because we now have more information to generate with
        de.getSnapshot().getElement().clear();
        de.getExtension().clear();
    } else {
        de = new StructureDefinition();
        de.setId("de-" + id);
        des.put(id, de);
        de.setUrl("http://hl7.org/fhir/StructureDefinition/" + de.getId());
        if (de.getId().contains("."))
            definitions.addNs(de.getUrl(), "Data Element " + ed.getPath(), definitions.getSrcFile(id.substring(0, id.indexOf("."))) + "-definitions.html#" + id);
        if (dataElements != null)
            dataElements.addEntry().setResource(de).setFullUrl(de.getUrl());
    }
    if (!de.hasMeta())
        de.setMeta(new Meta());
    de.getMeta().setLastUpdatedElement(new InstantType(genDate));
    de.setVersion(version.toCode());
    de.setName(ed.getPath());
    de.setStatus(PublicationStatus.DRAFT);
    de.setExperimental(true);
    de.setTitle(de.getName());
    de.setDate(genDate.getTime());
    de.setPublisher("HL7 FHIR Standard");
    de.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    de.setDescription("Data Element for " + ed.getPath());
    de.setPurpose("Data Elements are defined for each element to assist in questionnaire construction etc");
    de.setFhirVersion(version);
    de.setKind(StructureDefinitionKind.LOGICAL);
    de.setType("DataElement");
    de.setAbstract(false);
    de.setType(de.getName());
    de.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Element");
    de.setDerivation(TypeDerivationRule.SPECIALIZATION);
    de.getMapping().addAll(source.getMapping());
    ElementDefinition ted = ed.copy();
    de.getSnapshot().addElement(ted);
    ted.makeBase();
}

Example 15 with DataElement

use of org.hl7.fhir.dstu2.model.DataElement in project kindling by HL7.

the class Publisher method produceDictionary.

private void produceDictionary(Dictionary d) throws Exception {
    if (web)
        return;
    String src = TextFile.fileToString(page.getFolders().templateDir + "template-dictionary.html");
    String file = d.getSource();
    String prefix = d.getIg() != null ? d.getIg().getCode() + File.separator : "";
    String filename = prefix + d.getId();
    XmlParser xml = new XmlParser();
    Bundle dict = (Bundle) xml.parse(new CSFileInputStream(file));
    src = page.processPageIncludes(filename + ".html", src, "page", null, dict, null, "Dictionary", null, null, null);
    // before we save this page out, we're going to figure out what it's index
    // is, and number the headers if we can
    TextFile.stringToFile(src, page.getFolders().dstDir + filename + ".html");
    src = addSectionNumbers(filename + ".html", filename, src, null, d.getIg() != null ? 1 : 0, null, d.getIg());
    TextFile.stringToFile(src, page.getFolders().dstDir + filename + ".html");
    src = TextFile.fileToString(page.getFolders().templateDir + "template-dictionary.html").replace("<body>", "<body style=\"margin: 10px\">");
    src = page.processPageIncludesForBook(filename + ".html", src, "page", dict, null, null);
    cachePage(filename + ".html", src, d.getId(), true);
    xml.setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + filename + ".xml");
    xml.compose(s, dict);
    s.close();
    xml.setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + filename + ".canonical.xml");
    xml.compose(s, dict);
    s.close();
    cloneToXhtml(filename, "Source for Dictionary" + d.getName(), false, "dict-instance", "Dictionary", null, null);
    IParser json = new JsonParser().setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(page.getFolders().dstDir + filename + ".json");
    json.compose(s, dict);
    s.close();
    json = new JsonParser().setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(page.getFolders().dstDir + filename + ".canonical.json");
    json.compose(s, dict);
    s.close();
    jsonToXhtml(filename, "Source for Dictionary" + d.getName(), resource2Json(dict), "dict-instance", "Dictionary", null, null);
    ttlToXhtml(filename, "Source for Dictionary" + d.getName(), resource2Ttl(dict), "dict-instance", "Dictionary", null, null);
    throw new Error("must be redone");
// for (BundleEntryComponent e : dict.getEntry()) {
// produceDictionaryProfile(d, file, filename, (DataElement) e.getResource(), d.getIg());
// }
}