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Example 11 with DateType

use of org.hl7.fhir.dstu2.model.DateType in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.

@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    Map<String, Type> measureParameters = new HashMap<>();
    measureParameters.put("base64Param", new Base64BinaryType("AAA"));
    measureParameters.put("booleanParam", new BooleanType(false));
    measureParameters.put("dateParam", new DateType("2020-01-01"));
    measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
    measureParameters.put("decimalParam", new DecimalType(12.0));
    measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
    measureParameters.put("integerParam", new IntegerType(1));
    measureParameters.put("stringParam", new StringType("str"));
    measureParameters.put("timeParam", new TimeType("05:30:00"));
    measureParameters.put("uriParam", new UriType("abcde"));
    measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
    measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
    measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
    measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
    measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
    measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
    List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
    measure.setExtension(parameterExtensions);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(measureParameters.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(measureParameters.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
Also used : Arrays(java.util.Arrays) Date(java.util.Date) PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_VALUE_URL) Range(org.hl7.fhir.r4.model.Range) StringUtils(org.apache.commons.lang3.StringUtils) ConceptParameter(com.ibm.cohort.cql.evaluation.parameters.ConceptParameter) InvalidOperatorArgument(org.opencds.cqf.cql.engine.exception.InvalidOperatorArgument) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) HumanName(org.hl7.fhir.r4.model.HumanName) RatioParameter(com.ibm.cohort.cql.evaluation.parameters.RatioParameter) Map(java.util.Map) StringType(org.hl7.fhir.r4.model.StringType) Assert.fail(org.junit.Assert.fail) ParseException(java.text.ParseException) IntegerType(org.hl7.fhir.r4.model.IntegerType) Patient(org.hl7.fhir.r4.model.Patient) DefineReturnOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions.DefineReturnOptions) IntegerParameter(com.ibm.cohort.cql.evaluation.parameters.IntegerParameter) DateParameter(com.ibm.cohort.cql.evaluation.parameters.DateParameter) DateType(org.hl7.fhir.r4.model.DateType) TimeZone(java.util.TimeZone) CodeParameter(com.ibm.cohort.cql.evaluation.parameters.CodeParameter) Period(org.hl7.fhir.r4.model.Period) MEASURE_PARAMETER_URL(com.ibm.cohort.engine.cdm.CDMConstants.MEASURE_PARAMETER_URL) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Collectors(java.util.stream.Collectors) PARAMETER_DEFAULT_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_DEFAULT_URL) TimeType(org.hl7.fhir.r4.model.TimeType) List(java.util.List) BooleanType(org.hl7.fhir.r4.model.BooleanType) Assert.assertFalse(org.junit.Assert.assertFalse) Coding(org.hl7.fhir.r4.model.Coding) WireMock.getRequestedFor(com.github.tomakehurst.wiremock.client.WireMock.getRequestedFor) Extension(org.hl7.fhir.r4.model.Extension) UriType(org.hl7.fhir.r4.model.UriType) Parameter(com.ibm.cohort.cql.evaluation.parameters.Parameter) UnsupportedFhirTypeException(com.ibm.cohort.engine.measure.parameter.UnsupportedFhirTypeException) DatetimeParameter(com.ibm.cohort.cql.evaluation.parameters.DatetimeParameter) Type(org.hl7.fhir.r4.model.Type) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) HashMap(java.util.HashMap) IntervalParameter(com.ibm.cohort.cql.evaluation.parameters.IntervalParameter) DecimalParameter(com.ibm.cohort.cql.evaluation.parameters.DecimalParameter) Measure(org.hl7.fhir.r4.model.Measure) ArrayList(java.util.ArrayList) Address(org.hl7.fhir.r4.model.Address) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) QuantityParameter(com.ibm.cohort.cql.evaluation.parameters.QuantityParameter) MEASURE_PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.MEASURE_PARAMETER_VALUE_URL) MatcherAssert.assertThat(org.hamcrest.MatcherAssert.assertThat) Quantity(org.hl7.fhir.r4.model.Quantity) Ratio(org.hl7.fhir.r4.model.Ratio) MeasureSupplementalDataEvaluation(com.ibm.cohort.engine.cqfruler.MeasureSupplementalDataEvaluation) DecimalType(org.hl7.fhir.r4.model.DecimalType) Before(org.junit.Before) MeasureEvidenceOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions) StringParameter(com.ibm.cohort.cql.evaluation.parameters.StringParameter) Assert.assertNotNull(org.junit.Assert.assertNotNull) ListResource(org.hl7.fhir.r4.model.ListResource) Library(org.hl7.fhir.r4.model.Library) Assert.assertTrue(org.junit.Assert.assertTrue) Matchers(org.hamcrest.Matchers) CanonicalType(org.hl7.fhir.r4.model.CanonicalType) Test(org.junit.Test) TimeParameter(com.ibm.cohort.cql.evaluation.parameters.TimeParameter) WireMock.verify(com.github.tomakehurst.wiremock.client.WireMock.verify) WireMock.urlMatching(com.github.tomakehurst.wiremock.client.WireMock.urlMatching) Assert.assertNotEquals(org.junit.Assert.assertNotEquals) CDMConstants(com.ibm.cohort.engine.cdm.CDMConstants) MeasurePopulationType(org.opencds.cqf.common.evaluation.MeasurePopulationType) InstantType(org.hl7.fhir.r4.model.InstantType) AdministrativeGender(org.hl7.fhir.r4.model.Enumerations.AdministrativeGender) BooleanParameter(com.ibm.cohort.cql.evaluation.parameters.BooleanParameter) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) WireMock.urlEqualTo(com.github.tomakehurst.wiremock.client.WireMock.urlEqualTo) Assert.assertEquals(org.junit.Assert.assertEquals) HashMap(java.util.HashMap) StringType(org.hl7.fhir.r4.model.StringType) TimeType(org.hl7.fhir.r4.model.TimeType) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) UriType(org.hl7.fhir.r4.model.UriType) Coding(org.hl7.fhir.r4.model.Coding) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) Measure(org.hl7.fhir.r4.model.Measure) Ratio(org.hl7.fhir.r4.model.Ratio) InstantType(org.hl7.fhir.r4.model.InstantType) DateType(org.hl7.fhir.r4.model.DateType) BooleanType(org.hl7.fhir.r4.model.BooleanType) Patient(org.hl7.fhir.r4.model.Patient) Period(org.hl7.fhir.r4.model.Period) Quantity(org.hl7.fhir.r4.model.Quantity) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) Range(org.hl7.fhir.r4.model.Range) Date(java.util.Date) IntegerType(org.hl7.fhir.r4.model.IntegerType) Extension(org.hl7.fhir.r4.model.Extension) StringType(org.hl7.fhir.r4.model.StringType) IntegerType(org.hl7.fhir.r4.model.IntegerType) DateType(org.hl7.fhir.r4.model.DateType) TimeType(org.hl7.fhir.r4.model.TimeType) BooleanType(org.hl7.fhir.r4.model.BooleanType) UriType(org.hl7.fhir.r4.model.UriType) Type(org.hl7.fhir.r4.model.Type) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) DecimalType(org.hl7.fhir.r4.model.DecimalType) CanonicalType(org.hl7.fhir.r4.model.CanonicalType) MeasurePopulationType(org.opencds.cqf.common.evaluation.MeasurePopulationType) InstantType(org.hl7.fhir.r4.model.InstantType) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) DecimalType(org.hl7.fhir.r4.model.DecimalType) Library(org.hl7.fhir.r4.model.Library) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.Test)

Example 12 with DateType

use of org.hl7.fhir.dstu2.model.DateType in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testDate__shouldReturnDate.

@Test
public void testDate__shouldReturnDate() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("date");
    String dateString = "2020-01-01";
    DateType fhirValue = new DateType(dateString);
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    assertEquals(new DateParameter(dateString), R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : DateParameter(com.ibm.cohort.cql.evaluation.parameters.DateParameter) DateType(org.hl7.fhir.r4.model.DateType) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Test(org.junit.Test)

Example 13 with DateType

use of org.hl7.fhir.dstu2.model.DateType in project openmrs-module-fhir2 by openmrs.

the class FhirImmunizationServiceImplTest method updateImmunization_shouldUpdateImmunizationAccordingly.

@Test
public void updateImmunization_shouldUpdateImmunizationAccordingly() {
    // setup
    FhirContext ctx = FhirContext.forR4();
    IParser parser = ctx.newJsonParser();
    Immunization updatedImmunization = parser.parseResource(Immunization.class, "{\n" + "  \"resourceType\": \"Immunization\",\n" + "  \"id\": \"9353776b-dead-4588-8723-d687197d8438\",\n" + "  \"status\": \"completed\",\n" + "  \"vaccineCode\": {\n" + "    \"coding\": [\n" + "      {\n" + "        \"code\": \"d144d24f-6913-4b63-9660-a9108c2bebef\",\n" + "        \"display\": \"STAVUDINE LAMIVUDINE AND NEVIRAPINE\"\n" + "      }\n" + "    ]\n" + "  },\n" + "  \"patient\": {\n" + "    \"reference\": \"Patient/a7e04421-525f-442f-8138-05b619d16def\",\n" + "    \"type\": \"Patient\"\n" + "  },\n" + "  \"encounter\": {\n" + "    \"reference\": \"Encounter/7d8c1980-6b78-11e0-93c3-18a905e044dc\",\n" + "    \"type\": \"Encounter\"\n" + "  },\n" + "  \"occurrenceDateTime\": \"2020-07-08T20:30:00+02:00\",\n" + "  \"manufacturer\": {\n" + "    \"display\": \"Pharma Inc.\"\n" + "  },\n" + "  \"lotNumber\": \"YU765YT-1\",\n" + "  \"expirationDate\": \"2020-10-08\",\n" + "  \"performer\": [\n" + "    {\n" + "      \"actor\": {\n" + "        \"reference\": \"Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66\",\n" + "        \"type\": \"Practitioner\"\n" + "      }\n" + "    }\n" + "  ],\n" + "  \"protocolApplied\": [\n" + "    {\n" + "      \"doseNumberPositiveInt\": 4\n" + "    }\n" + "  ]\n" + "}");
    // replay
    Immunization savedImmunization = service.update("9353776b-dead-4588-8723-d687197d8438", updatedImmunization);
    Obs obs = obsService.getObsByUuid(savedImmunization.getId());
    // verify
    helper.validateImmunizationObsGroup(obs);
    assertObsCommons(obs, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66");
    obs.getGroupMembers().forEach(o -> {
        assertObsCommons(o, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66");
    });
    Map<String, Obs> members = helper.getObsMembersMap(obs);
    assertThat(members.get(CIEL_984).getValueCoded().getUuid(), is("d144d24f-6913-4b63-9660-a9108c2bebef"));
    assertThat(members.get(CIEL_1410).getValueDatetime(), equalTo(new DateTimeType("2020-07-08T20:30:00+02:00").getValue()));
    assertThat(members.get(CIEL_1418).getValueNumeric(), equalTo(4.0));
    assertThat(members.get(CIEL_1419).getValueText(), is("Pharma Inc."));
    assertThat(members.get(CIEL_1420).getValueText(), is("YU765YT-1"));
    assertThat(members.get(CIEL_165907).getValueDate(), equalTo(new DateType("2020-10-08").getValue()));
}
Also used : Obs(org.openmrs.Obs) FhirContext(ca.uhn.fhir.context.FhirContext) Immunization(org.hl7.fhir.r4.model.Immunization) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) DateType(org.hl7.fhir.r4.model.DateType) IParser(ca.uhn.fhir.parser.IParser) BaseModuleContextSensitiveTest(org.openmrs.test.BaseModuleContextSensitiveTest) Test(org.junit.Test)

Example 14 with DateType

use of org.hl7.fhir.dstu2.model.DateType in project openmrs-module-fhir2 by openmrs.

the class PractitionerTranslatorUserImplTest method shouldTranslateToFhirBirthDate.

@Test
public void shouldTranslateToFhirBirthDate() {
    User user = new User();
    Calendar calendar = Calendar.getInstance();
    DateType dateType = new DateType();
    // when birthdate more than 5 year
    calendar.set(2000, Calendar.AUGUST, 12);
    Person person = new Person();
    person.setBirthdateEstimated(true);
    person.setBirthdate(calendar.getTime());
    user.setPerson(person);
    Practitioner result = practitionerTranslatorUser.toFhirResource(user);
    assertThat(result, notNullValue());
    assertThat(result.getBirthDateElement().getPrecision(), equalTo(TemporalPrecisionEnum.YEAR));
    assertThat(result.getBirthDateElement().getYear(), equalTo(2000));
    // when birthDate less then 5 year
    Date date = new Date();
    user.getPerson().setBirthdate(date);
    dateType.setValue(date, TemporalPrecisionEnum.MONTH);
    result = practitionerTranslatorUser.toFhirResource(user);
    assertThat(result, notNullValue());
    assertThat(result.getBirthDateElement().getPrecision(), equalTo(TemporalPrecisionEnum.MONTH));
    assertThat(result.getBirthDateElement().getYear(), equalTo(dateType.getYear()));
    assertThat(result.getBirthDateElement().getMonth(), equalTo(dateType.getMonth()));
}
Also used : Practitioner(org.hl7.fhir.r4.model.Practitioner) User(org.openmrs.User) Calendar(java.util.Calendar) DateType(org.hl7.fhir.r4.model.DateType) Person(org.openmrs.Person) Date(java.util.Date) Test(org.junit.Test)

Example 15 with DateType

use of org.hl7.fhir.dstu2.model.DateType in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method processDateConstant.

private Base processDateConstant(Object appInfo, String value) throws PathEngineException {
    if (value.startsWith("T"))
        return new TimeType(value.substring(1));
    String v = value;
    if (v.length() > 10) {
        int i = v.substring(10).indexOf("-");
        if (i == -1)
            i = v.substring(10).indexOf("+");
        if (i == -1)
            i = v.substring(10).indexOf("Z");
        v = i == -1 ? value : v.substring(0, 10 + i);
    }
    if (v.length() > 10)
        return new DateTimeType(value);
    else
        return new DateType(value);
}
Also used : DateTimeType(org.hl7.fhir.dstu2.model.DateTimeType) DateType(org.hl7.fhir.dstu2.model.DateType) DateTimeType(org.hl7.fhir.dstu2.model.DateTimeType) TimeType(org.hl7.fhir.dstu2.model.TimeType)

Aggregations

DateType (org.hl7.fhir.r4.model.DateType)36 Test (org.junit.jupiter.api.Test)21 Date (java.util.Date)17 Coding (org.hl7.fhir.r4.model.Coding)15 Test (org.junit.Test)11 SupportingInformationComponent (org.hl7.fhir.r4.model.ExplanationOfBenefit.SupportingInformationComponent)10 DateType (org.hl7.fhir.r4b.model.DateType)10 FHIRException (org.hl7.fhir.exceptions.FHIRException)9 ArrayList (java.util.ArrayList)8 DateType (org.hl7.fhir.r5.model.DateType)8 DateType (org.hl7.fhir.dstu3.model.DateType)7 Extension (org.hl7.fhir.r4.model.Extension)6 Calendar (java.util.Calendar)5 DisplayName (org.junit.jupiter.api.DisplayName)5 InvalidRifValueException (gov.cms.bfd.model.rif.parse.InvalidRifValueException)4 DateType (org.hl7.fhir.dstu2016may.model.DateType)4 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)4 DateTimeType (org.hl7.fhir.r4.model.DateTimeType)4 Patient (org.hl7.fhir.r4.model.Patient)4 Reference (org.hl7.fhir.r4.model.Reference)4