Examples with SearchParameter org.hl7.fhir.r4b.model.SearchParameter used on opensource projects

Example 46 with SearchParameter

use of org.hl7.fhir.r4b.model.SearchParameter in project kindling by HL7.

the class SpreadSheetCreator method addPack.

private void addPack(XSSFSheet sheet, String ref) throws FHIRFormatError, FileNotFoundException, IOException {
    ImplementationGuide ig = (ImplementationGuide) parseXml(fnIG(ref));
    ig.setText(null);
    int rowCount = 1;
    sortExtensions(ig);
    addPackRow(sheet, CN_ID, ig.getId(), rowCount++);
    addPackRow(sheet, CN_CODE, BuildExtensions.readStringExtension(ig, BuildExtensions.EXT_CODE), rowCount++);
    addPackRow(sheet, CN_NAME, ig.getName(), rowCount++);
    addPackRow(sheet, CN_TITLE, ig.getTitle(), rowCount++);
    addPackRow(sheet, CN_VERSION, ig.getVersion(), rowCount++);
    addPackRow(sheet, CN_DESCRIPTION, ig.getDescription(), rowCount++);
    addPackRow(sheet, CN_PUBLISHER, ig.getPublisher(), rowCount++);
    addPackRow(sheet, CN_STATUS, ig.getStatus().toCode(), rowCount++);
    addPackRow(sheet, CN_EXPERIMENTAL, ig.getExperimentalElement().primitiveValue(), rowCount++);
    addPackRow(sheet, CN_DATE, ig.getDateElement().primitiveValue(), rowCount++);
    addPackRow(sheet, CN_FMM, BuildExtensions.readStringExtension(ig, BuildExtensions.EXT_FMM_LEVEL), rowCount++);
    addPackRow(sheet, CN_WORK_GROUP, BuildExtensions.readStringExtension(ig, BuildExtensions.EXT_WORKGROUP), rowCount++);
    addPackRow(sheet, CN_INTRODUCTION, BuildExtensions.readStringExtension(ig, BuildExtensions.EXT_INTRODUCTION), rowCount++);
    addPackRow(sheet, CN_NOTES, BuildExtensions.readStringExtension(ig, BuildExtensions.EXT_NOTES), rowCount++);
    for (ImplementationGuideDefinitionResourceComponent res : ig.getDefinition().getResource()) {
        String r = res.getReference().getReference();
        String id = r.substring(r.indexOf("/") + 1);
        if (r.startsWith("SearchParameter/")) {
            addPackRow(sheet, CN_SEARCH_PARAMETER, id, rowCount++);
        } else if (r.startsWith("StructureDefinition/")) {
            String fn = fnExt(id);
            if (new File(fn).exists()) {
                addPackRow(sheet, CN_EXTENSION, id, rowCount++);
            } else {
                addPackRow(sheet, CN_PROFILE, id, rowCount++);
            }
        } else {
            addPackRow(sheet, CN_EXAMPLE, r, rowCount++);
        }
    }
}

Example 47 with SearchParameter

use of org.hl7.fhir.r4b.model.SearchParameter in project kindling by HL7.

the class Publisher method addSearchParams.

private void addSearchParams(Set<String> uris, Bundle bundle, ResourceDefn rd) throws Exception {
    if (rd.getConformancePack() == null) {
        for (SearchParameterDefn spd : rd.getSearchParams().values()) {
            if (spd.getResource() == null) {
                buildSearchDefinition(rd, spd);
            }
            SearchParameter sp = spd.getResource();
            if (!uris.contains(sp.getUrl())) {
                bundle.addEntry().setResource(sp).setFullUrl("http://hl7.org/fhir/" + sp.fhirType() + "/" + sp.getId());
                uris.add(sp.getUrl());
            }
        }
    } else
        addSearchParams(uris, bundle, rd.getConformancePack());
}

Example 48 with SearchParameter

use of org.hl7.fhir.r4b.model.SearchParameter in project kindling by HL7.

the class Publisher method makeSearchParam.

private CapabilityStatementRestResourceSearchParamComponent makeSearchParam(String rn, SearchParameterDefn i) throws Exception {
    CapabilityStatementRestResourceSearchParamComponent result = new CapabilityStatement.CapabilityStatementRestResourceSearchParamComponent();
    result.setName(i.getCode());
    result.setDefinition("http://hl7.org/fhir/SearchParameter/" + i.getCommonId());
    result.setType(getSearchParamType(i.getType()));
    result.setDocumentation(i.getDescription());
    if (Utilities.noString(i.getXPath()))
        // used elsewhere later
        i.setXPath(new XPathQueryGenerator(page.getDefinitions(), page, page.getQa()).generateXpath(i.getPaths(), rn));
    return result;
}

Example 49 with SearchParameter

use of org.hl7.fhir.r4b.model.SearchParameter in project kindling by HL7.

the class Publisher method produceConformancePackage.

private void produceConformancePackage(ResourceDefn res, Profile pack, SectionTracker st) throws Exception {
    String resourceName = res == null ? "" : res.getName();
    if (Utilities.noString(resourceName)) {
        if (pack.getProfiles().size() == 1)
            if (pack.getProfiles().get(0).getDefn() != null)
                resourceName = pack.getProfiles().get(0).getDefn().getName();
            else
                resourceName = pack.getProfiles().get(0).getResource().getType();
        else if (pack.getProfiles().size() == 0) {
        // throw new Exception("Unable to determine resource name - no profiles"); no, we don't complain
        } else if (pack.getProfiles().get(0).getDefn() != null) {
            resourceName = pack.getProfiles().get(0).getDefn().getName();
            for (int i = 1; i < pack.getProfiles().size(); i++) if (!pack.getProfiles().get(i).getDefn().getName().equals(resourceName))
                throw new Exception("Unable to determine resource name - profile mismatch " + resourceName + "/" + pack.getProfiles().get(i).getDefn().getName());
        }
    }
    ImplementationGuideDefn ig = page.getDefinitions().getIgs().get(pack.getCategory());
    String prefix = (ig == null || ig.isCore()) ? "" : ig.getCode() + File.separator;
    String intro = pack.getIntroduction() != null ? page.loadXmlNotesFromFile(pack.getIntroduction(), false, null, null, null, null, res == null ? wg("fhir") : res.getWg()) : null;
    String notes = pack.getNotes() != null ? page.loadXmlNotesFromFile(pack.getNotes(), false, null, null, null, null, res == null ? wg("fhir") : res.getWg()) : null;
    if (!("profile".equals(pack.metadata("navigation")) && pack.getProfiles().size() == 1)) {
        String src = TextFile.fileToString(page.getFolders().templateDir + "template-conformance-pack.html");
        src = page.processConformancePackageIncludes(pack, src, intro, notes, resourceName, ig);
        if (st != null)
            src = insertSectionNumbers(src, st, pack.getId().toLowerCase() + ".html", 0, null);
        else if (ig != null && !ig.isCore())
            src = addSectionNumbers(pack.getId() + ".html", pack.getId().toLowerCase(), src, null, 1, null, ig);
        page.getHTMLChecker().registerFile(prefix + pack.getId().toLowerCase() + ".html", "Profile " + pack.getId(), HTMLLinkChecker.XHTML_TYPE, true);
        TextFile.stringToFile(src, page.getFolders().dstDir + prefix + pack.getId().toLowerCase() + ".html");
    }
    // now, we produce each profile
    for (ConstraintStructure profile : pack.getProfiles()) produceProfile(res, pack, profile, st, intro, notes, prefix, ig);
    for (SearchParameter sp : pack.getSearchParameters()) producePackSearchParameter(res, pack, sp, st, ig);
    for (Example ex : pack.getExamples()) {
        StructureDefinition sd = null;
        boolean ambiguous = false;
        for (ConstraintStructure sdt : pack.getProfiles()) {
            if (sdt.getResource().getSnapshot().getElement().get(0).getPath().equals(resourceName))
                if (sd == null)
                    sd = sdt.getResource();
                else
                    ambiguous = true;
        }
        if (ambiguous)
            processExample(ex, res, null, null, ig);
        else
            processExample(ex, res, sd, pack, ig);
    }
// create examples here
// if (examples != null) {
// for (String en : examples.keySet()) {
// processExample(examples.get(en), null, profile.getSource());
}

Example 50 with SearchParameter

use of org.hl7.fhir.r4b.model.SearchParameter in project kindling by HL7.

the class Publisher method produceSpecification.

// private List<Element> xPathQuery(String path, Element e) throws Exception {
// NamespaceContext context = new NamespaceContextMap("f",
// "http://hl7.org/fhir", "h", "http://www.w3.org/1999/xhtml", "a", );
// 
// XPathFactory factory = XPathFactory.newInstance();
// XPath xpath = factory.newXPath();
// xpath.setNamespaceContext(context);
// XPathExpression expression= xpath.compile(path);
// NodeList resultNodes = (NodeList)expression.evaluate(e,
// XPathConstants.NODESET);
// List<Element> result = new ArrayList<Element>();
// for (int i = 0; i < resultNodes.getLength(); i++) {
// result.add((Element) resultNodes.item(i));
// }
// return result;
// }
private void produceSpecification() throws Exception {
    page.setNavigation(new Navigation());
    page.getNavigation().parse(page.getFolders().srcDir + "navigation.xml");
    processCDA();
    page.log("Generate RDF", LogMessageType.Process);
    processRDF();
    page.log("Produce Schemas", LogMessageType.Process);
    new SchemaGenerator().generate(page.getDefinitions(), page.getIni(), page.getFolders().tmpResDir, page.getFolders().xsdDir + "codegen" + File.separator, page.getFolders().dstDir, page.getFolders().srcDir, page.getVersion().toCode(), Config.DATE_FORMAT().format(page.getGenDate().getTime()), true, page.getWorkerContext());
    new SchemaGenerator().generate(page.getDefinitions(), page.getIni(), page.getFolders().tmpResDir, page.getFolders().xsdDir, page.getFolders().dstDir, page.getFolders().srcDir, page.getVersion().toCode(), Config.DATE_FORMAT().format(page.getGenDate().getTime()), false, page.getWorkerContext());
    new org.hl7.fhir.definitions.generators.specification.json.SchemaGenerator().generate(page.getDefinitions(), page.getIni(), page.getFolders().tmpResDir, page.getFolders().xsdDir, page.getFolders().dstDir, page.getFolders().srcDir, page.getVersion().toCode(), Config.DATE_FORMAT().format(page.getGenDate().getTime()), page.getWorkerContext());
    new org.hl7.fhir.definitions.generators.specification.json.JsonLDDefinitionsGenerator().generate(page.getDefinitions(), page.getIni(), page.getFolders().tmpResDir, page.getFolders().dstDir, page.getFolders().srcDir, page.getVersion(), Config.DATE_FORMAT().format(page.getGenDate().getTime()), page.getWorkerContext());
    List<StructureDefinition> list = new ArrayList<StructureDefinition>();
    for (StructureDefinition sd : page.getWorkerContext().allStructures()) {
        if (sd.getDerivation() == TypeDerivationRule.SPECIALIZATION)
            list.add(sd);
    }
    ShExGenerator shgen = new ShExGenerator(page.getWorkerContext());
    shgen.completeModel = true;
    shgen.withComments = false;
    TextFile.stringToFile(shgen.generate(HTMLLinkPolicy.NONE, list), page.getFolders().dstDir + "fhir.shex", false);
    new XVerPathsGenerator(page.getDefinitions(), Utilities.path(page.getFolders().dstDir, "xver-paths-" + Constants.VERSION_MM + ".json"), Utilities.path(page.getFolders().rootDir, "tools", "history", "release4", "xver-paths-4.0.json")).execute();
    GraphQLSchemaGenerator gql = new GraphQLSchemaGenerator(page.getWorkerContext(), page.getVersion().toCode());
    gql.generateTypes(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "types.graphql")));
    Set<String> names = new HashSet<String>();
    for (StructureDefinition sd : page.getWorkerContext().allStructures()) {
        if (sd.getKind() == StructureDefinitionKind.RESOURCE && sd.getAbstract() == false && sd.getDerivation() == TypeDerivationRule.SPECIALIZATION && !names.contains(sd.getUrl())) {
            String filename = Utilities.path(page.getFolders().dstDir, sd.getName().toLowerCase() + ".graphql");
            names.add(sd.getUrl());
            List<SearchParameter> splist = new ArrayList<SearchParameter>();
            ResourceDefn rd = page.getDefinitions().getResourceByName(sd.getName());
            while (rd != null) {
                for (String n : sorted(rd.getSearchParams().keySet())) {
                    SearchParameterDefn spd = rd.getSearchParams().get(n);
                    if (spd.getResource() == null)
                        buildSearchDefinition(rd, spd);
                    splist.add(spd.getResource());
                }
                rd = "Base".equals(rd.getRoot().typeCode()) || rd.getRoot().getTypes().isEmpty() ? null : page.getDefinitions().getResourceByName(rd.getRoot().typeCode());
            }
            EnumSet<FHIROperationType> ops = EnumSet.of(FHIROperationType.READ, FHIROperationType.SEARCH, FHIROperationType.CREATE, FHIROperationType.UPDATE, FHIROperationType.DELETE);
            gql.generateResource(new FileOutputStream(filename), sd, splist, ops);
        }
    }
    TextFile.stringToFile(page.genBackboneElementsJson(), Utilities.path(page.getFolders().dstDir, "backbone-elements.json"));
    TextFile.stringToFile(page.genChoiceElementsJson(), Utilities.path(page.getFolders().dstDir, "choice-elements.json"));
    page.log("Produce Schematrons", LogMessageType.Process);
    for (String rname : page.getDefinitions().sortedResourceNames()) {
        ResourceDefn r = page.getDefinitions().getResources().get(rname);
        String n = r.getName().toLowerCase();
        SchematronGenerator sch = new SchematronGenerator(page);
        sch.generate(new FileOutputStream(page.getFolders().dstDir + n + ".sch"), r, page.getDefinitions());
    }
    ResourceDefn r = page.getDefinitions().getBaseResources().get("Parameters");
    String n = r.getName().toLowerCase();
    SchematronGenerator sch = new SchematronGenerator(page);
    sch.generate(new FileOutputStream(page.getFolders().dstDir + n + ".sch"), r, page.getDefinitions());
    SchematronGenerator sg = new SchematronGenerator(page);
    sg.generate(new FileOutputStream(page.getFolders().dstDir + "fhir-invariants.sch"), page.getDefinitions());
    produceSchemaZip();
    page.log("Load R4 Definitions", LogMessageType.Process);
    loadR4Definitions();
    page.log("Produce Content", LogMessageType.Process);
    produceSpec();
    if (buildFlags.get("all")) {
        if (web) {
            generateRedirects();
        }
    }
    page.clean();
}