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Example 1 with TimeType

use of org.hl7.fhir.r4b.model.TimeType in project quality-measure-and-cohort-service by Alvearie.

the class CQLToFHIRMeasureReportHelperTest method testTime.

@Test
public void testTime() {
    String timeString = "00:10:00.000";
    Time expected = new Time(timeString);
    IBaseDatatype fhirTypeValue = CQLToFHIRMeasureReportHelper.getFhirTypeValue(expected);
    assertTrue(fhirTypeValue instanceof TimeType);
    assertEquals(timeString, ((TimeType) fhirTypeValue).getValueAsString());
}
Also used : IBaseDatatype(org.hl7.fhir.instance.model.api.IBaseDatatype) LocalDateTime(java.time.LocalDateTime) Time(org.opencds.cqf.cql.engine.runtime.Time) OffsetDateTime(java.time.OffsetDateTime) DateTime(org.opencds.cqf.cql.engine.runtime.DateTime) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) TimeType(org.hl7.fhir.r4.model.TimeType) Test(org.junit.Test)

Example 2 with TimeType

use of org.hl7.fhir.r4b.model.TimeType in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.

@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    Map<String, Type> measureParameters = new HashMap<>();
    measureParameters.put("base64Param", new Base64BinaryType("AAA"));
    measureParameters.put("booleanParam", new BooleanType(false));
    measureParameters.put("dateParam", new DateType("2020-01-01"));
    measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
    measureParameters.put("decimalParam", new DecimalType(12.0));
    measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
    measureParameters.put("integerParam", new IntegerType(1));
    measureParameters.put("stringParam", new StringType("str"));
    measureParameters.put("timeParam", new TimeType("05:30:00"));
    measureParameters.put("uriParam", new UriType("abcde"));
    measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
    measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
    measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
    measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
    measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
    measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
    List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
    measure.setExtension(parameterExtensions);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(measureParameters.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(measureParameters.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
Also used : Arrays(java.util.Arrays) Date(java.util.Date) PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_VALUE_URL) Range(org.hl7.fhir.r4.model.Range) StringUtils(org.apache.commons.lang3.StringUtils) ConceptParameter(com.ibm.cohort.cql.evaluation.parameters.ConceptParameter) InvalidOperatorArgument(org.opencds.cqf.cql.engine.exception.InvalidOperatorArgument) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) HumanName(org.hl7.fhir.r4.model.HumanName) RatioParameter(com.ibm.cohort.cql.evaluation.parameters.RatioParameter) Map(java.util.Map) StringType(org.hl7.fhir.r4.model.StringType) Assert.fail(org.junit.Assert.fail) ParseException(java.text.ParseException) IntegerType(org.hl7.fhir.r4.model.IntegerType) Patient(org.hl7.fhir.r4.model.Patient) DefineReturnOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions.DefineReturnOptions) IntegerParameter(com.ibm.cohort.cql.evaluation.parameters.IntegerParameter) 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UnsupportedFhirTypeException(com.ibm.cohort.engine.measure.parameter.UnsupportedFhirTypeException) DatetimeParameter(com.ibm.cohort.cql.evaluation.parameters.DatetimeParameter) Type(org.hl7.fhir.r4.model.Type) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) HashMap(java.util.HashMap) IntervalParameter(com.ibm.cohort.cql.evaluation.parameters.IntervalParameter) DecimalParameter(com.ibm.cohort.cql.evaluation.parameters.DecimalParameter) Measure(org.hl7.fhir.r4.model.Measure) ArrayList(java.util.ArrayList) Address(org.hl7.fhir.r4.model.Address) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) QuantityParameter(com.ibm.cohort.cql.evaluation.parameters.QuantityParameter) MEASURE_PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.MEASURE_PARAMETER_VALUE_URL) MatcherAssert.assertThat(org.hamcrest.MatcherAssert.assertThat) Quantity(org.hl7.fhir.r4.model.Quantity) Ratio(org.hl7.fhir.r4.model.Ratio) MeasureSupplementalDataEvaluation(com.ibm.cohort.engine.cqfruler.MeasureSupplementalDataEvaluation) DecimalType(org.hl7.fhir.r4.model.DecimalType) Before(org.junit.Before) MeasureEvidenceOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions) StringParameter(com.ibm.cohort.cql.evaluation.parameters.StringParameter) Assert.assertNotNull(org.junit.Assert.assertNotNull) ListResource(org.hl7.fhir.r4.model.ListResource) Library(org.hl7.fhir.r4.model.Library) Assert.assertTrue(org.junit.Assert.assertTrue) Matchers(org.hamcrest.Matchers) CanonicalType(org.hl7.fhir.r4.model.CanonicalType) Test(org.junit.Test) TimeParameter(com.ibm.cohort.cql.evaluation.parameters.TimeParameter) WireMock.verify(com.github.tomakehurst.wiremock.client.WireMock.verify) WireMock.urlMatching(com.github.tomakehurst.wiremock.client.WireMock.urlMatching) Assert.assertNotEquals(org.junit.Assert.assertNotEquals) CDMConstants(com.ibm.cohort.engine.cdm.CDMConstants) MeasurePopulationType(org.opencds.cqf.common.evaluation.MeasurePopulationType) InstantType(org.hl7.fhir.r4.model.InstantType) AdministrativeGender(org.hl7.fhir.r4.model.Enumerations.AdministrativeGender) BooleanParameter(com.ibm.cohort.cql.evaluation.parameters.BooleanParameter) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) WireMock.urlEqualTo(com.github.tomakehurst.wiremock.client.WireMock.urlEqualTo) Assert.assertEquals(org.junit.Assert.assertEquals) HashMap(java.util.HashMap) StringType(org.hl7.fhir.r4.model.StringType) TimeType(org.hl7.fhir.r4.model.TimeType) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) UriType(org.hl7.fhir.r4.model.UriType) Coding(org.hl7.fhir.r4.model.Coding) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) Measure(org.hl7.fhir.r4.model.Measure) Ratio(org.hl7.fhir.r4.model.Ratio) InstantType(org.hl7.fhir.r4.model.InstantType) DateType(org.hl7.fhir.r4.model.DateType) BooleanType(org.hl7.fhir.r4.model.BooleanType) 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Example 3 with TimeType

use of org.hl7.fhir.r4b.model.TimeType in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testTime__shouldReturnTimeParameter.

@Test
public void testTime__shouldReturnTimeParameter() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("time");
    String timeString = "12:30:00";
    TimeType fhirValue = new TimeType(timeString);
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    assertEquals(new TimeParameter(timeString), R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : TimeParameter(com.ibm.cohort.cql.evaluation.parameters.TimeParameter) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) TimeType(org.hl7.fhir.r4.model.TimeType) Test(org.junit.Test)

Example 4 with TimeType

use of org.hl7.fhir.r4b.model.TimeType in project org.hl7.fhir.core by hapifhir.

the class FHIRPathEngine method processDateConstant.

private Base processDateConstant(Object appInfo, String value) throws PathEngineException {
    if (value.startsWith("T"))
        return new TimeType(value.substring(1));
    String v = value;
    if (v.length() > 10) {
        int i = v.substring(10).indexOf("-");
        if (i == -1)
            i = v.substring(10).indexOf("+");
        if (i == -1)
            i = v.substring(10).indexOf("Z");
        v = i == -1 ? value : v.substring(0, 10 + i);
    }
    if (v.length() > 10)
        return new DateTimeType(value);
    else
        return new DateType(value);
}
Also used : DateTimeType(org.hl7.fhir.dstu2.model.DateTimeType) DateType(org.hl7.fhir.dstu2.model.DateType) DateTimeType(org.hl7.fhir.dstu2.model.DateTimeType) TimeType(org.hl7.fhir.dstu2.model.TimeType)

Example 5 with TimeType

use of org.hl7.fhir.r4b.model.TimeType in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeTime.

protected void composeTime(Complex parent, String parentType, String name, TimeType value, int index) {
    if (value == null)
        return;
    Complex t = parent.predicate("fhir:" + parentType + "." + name);
    t.predicate("fhir:value", ttlLiteral(value.asStringValue()));
    composeElement(t, parentType, name, value, index);
}
Also used : Complex(org.hl7.fhir.dstu2016may.formats.RdfGenerator.Complex)

Aggregations

FHIRException (org.hl7.fhir.exceptions.FHIRException)9 TimeType (org.hl7.fhir.r4b.model.TimeType)8 TimeType (org.hl7.fhir.r5.model.TimeType)6 DateTimeType (org.hl7.fhir.r4.model.DateTimeType)5 TimeType (org.hl7.fhir.r4.model.TimeType)5 DateTimeType (org.hl7.fhir.r5.model.DateTimeType)5 DisplayName (org.junit.jupiter.api.DisplayName)5 Test (org.junit.jupiter.api.Test)5 TimeParameter (com.ibm.cohort.cql.evaluation.parameters.TimeParameter)3 DateType (org.hl7.fhir.r5.model.DateType)3 Test (org.junit.Test)3 TemporalPrecisionEnum (ca.uhn.fhir.model.api.TemporalPrecisionEnum)2 BooleanParameter (com.ibm.cohort.cql.evaluation.parameters.BooleanParameter)2 CodeParameter (com.ibm.cohort.cql.evaluation.parameters.CodeParameter)2 ConceptParameter (com.ibm.cohort.cql.evaluation.parameters.ConceptParameter)2 DateParameter (com.ibm.cohort.cql.evaluation.parameters.DateParameter)2 DatetimeParameter (com.ibm.cohort.cql.evaluation.parameters.DatetimeParameter)2 DecimalParameter (com.ibm.cohort.cql.evaluation.parameters.DecimalParameter)2 IntegerParameter (com.ibm.cohort.cql.evaluation.parameters.IntegerParameter)2 IntervalParameter (com.ibm.cohort.cql.evaluation.parameters.IntervalParameter)2