Examples with DateTimeType org.hl7.fhir.r5.model.DateTimeType used on opensource projects

Example 71 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process DocumentManifest resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(DocumentManifest manifest, SubmissionSet submissionSet) {
    // masterIdentifier	SubmissionSet.uniqueId
    Identifier masterIdentifier = manifest.getMasterIdentifier();
    submissionSet.setUniqueId(noPrefix(masterIdentifier.getValue()));
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    CodeableConcept type = manifest.getType();
    submissionSet.setContentTypeCode(transformCodeableConcept(type));
    DateTimeType created = manifest.getCreatedElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasAuthor() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getAuthorFirstRep();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    // recipient	SubmissionSet.intendedRecipient
    for (Reference recipientRef : manifest.getRecipient()) {
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    // source	SubmissionSet.sourceId
    String source = noPrefix(manifest.getSource());
    submissionSet.setSourceId(source);
    String description = manifest.getDescription();
    if (description != null)
        submissionSet.setTitle(localizedString(description));
}

Example 72 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project MobileAccessGateway by i4mi.

the class Iti65RequestConverter method processDocumentManifest.

/**
 * ITI-65: process ListResource resource from Bundle
 * @param manifest
 * @param submissionSet
 */
private void processDocumentManifest(ListResource manifest, SubmissionSet submissionSet) {
    for (Identifier id : manifest.getIdentifier()) {
        if (id.getUse() == null || id.getUse().equals(Identifier.IdentifierUse.OFFICIAL)) {
        } else if (id.getUse().equals(Identifier.IdentifierUse.USUAL)) {
            String uniqueId = noPrefix(id.getValue());
            submissionSet.setUniqueId(uniqueId);
        }
    }
    submissionSet.assignEntryUuid();
    manifest.setId(submissionSet.getEntryUuid());
    Extension designationType = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-designationType");
    if (designationType != null && designationType.getValue() instanceof CodeableConcept) {
        submissionSet.setContentTypeCode(transformCodeableConcept((CodeableConcept) designationType.getValue()));
    }
    DateTimeType created = manifest.getDateElement();
    submissionSet.setSubmissionTime(timestampFromDate(created));
    // subject	SubmissionSet.patientId
    Reference ref = manifest.getSubject();
    submissionSet.setPatientId(transformReferenceToIdentifiable(ref, manifest));
    // Author
    Extension authorRoleExt = manifest.getExtensionByUrl("http://fhir.ch/ig/ch-epr-mhealth/StructureDefinition/ch-ext-author-authorrole");
    if (manifest.hasSource() || (authorRoleExt != null)) {
        Identifiable identifiable = null;
        Reference author = manifest.getSource();
        if (authorRoleExt != null) {
            Coding coding = authorRoleExt.castToCoding(authorRoleExt.getValue());
            if (coding != null) {
                identifiable = new Identifiable(coding.getCode(), new AssigningAuthority(noPrefix(coding.getSystem())));
            }
        }
        submissionSet.setAuthor(transformAuthor(author, manifest.getContained(), identifiable));
    }
    for (Extension recipientExt : manifest.getExtensionsByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-intendedRecipient")) {
        Reference recipientRef = (Reference) recipientExt.getValue();
        Resource res = findResource(recipientRef, manifest.getContained());
        if (res instanceof Practitioner) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Practitioner) res));
            recipient.setTelecom(transform(((Practitioner) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Organization) {
            Recipient recipient = new Recipient();
            recipient.setOrganization(transform((Organization) res));
            recipient.setTelecom(transform(((Organization) res).getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof PractitionerRole) {
            Recipient recipient = new Recipient();
            PractitionerRole role = (PractitionerRole) res;
            recipient.setOrganization(transform((Organization) findResource(role.getOrganization(), manifest.getContained())));
            recipient.setPerson(transform((Practitioner) findResource(role.getPractitioner(), manifest.getContained())));
            recipient.setTelecom(transform(role.getTelecomFirstRep()));
            submissionSet.getIntendedRecipients().add(recipient);
        } else if (res instanceof Patient) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((Patient) res));
            recipient.setTelecom(transform(((Patient) res).getTelecomFirstRep()));
        } else if (res instanceof RelatedPerson) {
            Recipient recipient = new Recipient();
            recipient.setPerson(transform((RelatedPerson) res));
            recipient.setTelecom(transform(((RelatedPerson) res).getTelecomFirstRep()));
        }
    }
    Extension source = manifest.getExtensionByUrl("http://profiles.ihe.net/ITI/MHD/StructureDefinition/ihe-sourceId");
    if (source != null && source.getValue() instanceof Identifier) {
        submissionSet.setSourceId(noPrefix(((Identifier) source.getValue()).getValue()));
    }
    String title = manifest.getTitle();
    if (title != null)
        submissionSet.setTitle(localizedString(title));
    Annotation note = manifest.getNoteFirstRep();
    if (note != null && note.hasText()) {
        submissionSet.setComments(localizedString(note.getText()));
    }
}

Example 73 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project synthea by synthetichealth.

the class FhirR4 method medicationAdministration.

/**
 * Add a MedicationAdministration if needed for the given medication.
 *
 * @param rand              Source of randomness to use when generating ids etc
 * @param personEntry       The Entry for the Person
 * @param bundle            Bundle to add the MedicationAdministration to
 * @param encounterEntry    Current Encounter entry
 * @param medication        The Medication
 * @param medicationRequest The related medicationRequest
 * @return The added Entry
 */
private static BundleEntryComponent medicationAdministration(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Medication medication, MedicationRequest medicationRequest) {
    MedicationAdministration medicationResource = new MedicationAdministration();
    medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
    medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = medication.codes.get(0);
    String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;
    medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
    medicationResource.setEffective(new DateTimeType(new Date(medication.start)));
    medicationResource.setStatus(MedicationAdministration.MedicationAdministrationStatus.COMPLETED);
    if (medication.prescriptionDetails != null) {
        JsonObject rxInfo = medication.prescriptionDetails;
        MedicationAdministrationDosageComponent dosage = new MedicationAdministrationDosageComponent();
        // as_needed is false
        if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
            Quantity dose = new SimpleQuantity().setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
            dosage.setDose((SimpleQuantity) dose);
            if (rxInfo.has("instructions")) {
                for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
                    JsonObject instruction = instructionElement.getAsJsonObject();
                    dosage.setText(instruction.get("display").getAsString());
                }
            }
        }
        if (rxInfo.has("refills")) {
            SimpleQuantity rate = new SimpleQuantity();
            rate.setValue(rxInfo.get("refills").getAsLong());
            dosage.setRate(rate);
        }
        medicationResource.setDosage(dosage);
    }
    if (!medication.reasons.isEmpty()) {
        // Only one element in list
        Code reason = medication.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    medicationResource.addReasonReference().setReference(entry.getFullUrl());
                }
            }
        }
    }
    BundleEntryComponent medicationAdminEntry = newEntry(rand, bundle, medicationResource);
    return medicationAdminEntry;
}

Example 74 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project gpconnect-demonstrator by nhsconnect.

the class MedicationStatementResourceProvider method getMedicationStatementResource.

public MedicationStatement getMedicationStatementResource(MedicationStatementDetail statementDetail) {
    MedicationStatement medicationStatement = new MedicationStatement();
    medicationStatement.setId(statementDetail.getId().toString());
    List<Identifier> identifiers = new ArrayList<>();
    Identifier identifier = new Identifier().setSystem("https://fhir.nhs.uk/Id/cross-care-setting-identifier").setValue(statementDetail.getGuid());
    identifiers.add(identifier);
    medicationStatement.setIdentifier(identifiers);
    medicationStatement.setMeta(new Meta().addProfile(SystemURL.SD_GPC_MEDICATION_STATEMENT));
    medicationStatement.addExtension(new Extension(SystemURL.SD_CC_EXT_MEDICATION_STATEMENT_LAST_ISSUE, new DateTimeType(statementDetail.getLastIssueDate(), TemporalPrecisionEnum.DAY)));
    if (statementDetail.getMedicationRequestPlanId() != null) {
        medicationStatement.addBasedOn(new Reference(new IdType("MedicationRequest", statementDetail.getMedicationRequestPlanId())));
    }
    try {
        medicationStatement.setStatus(MedicationStatementStatus.fromCode(statementDetail.getStatusCode()));
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    if (statementDetail.getMedicationId() != null) {
        medicationStatement.setMedication(new Reference(new IdType("Medication", statementDetail.getMedicationId())));
    }
    medicationStatement.setEffective(new Period().setStart(statementDetail.getStartDate()).setEnd(statementDetail.getEndDate()));
    medicationStatement.setDateAsserted(statementDetail.getDateAsserted());
    if (statementDetail.getPatientId() != null)
        medicationStatement.setSubject(new Reference(new IdType("Patient", statementDetail.getPatientId())));
    try {
        medicationStatement.setTaken(statementDetail.getTakenCode() != null ? MedicationStatementTaken.fromCode(statementDetail.getTakenCode()) : MedicationStatementTaken.UNK);
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    setReasonCodes(medicationStatement, statementDetail);
    setNotes(medicationStatement, statementDetail);
    String dosageText = statementDetail.getDosageText();
    medicationStatement.addDosage(new Dosage().setText(dosageText == null || dosageText.trim().isEmpty() ? NO_INFORMATION_AVAILABLE : dosageText).setPatientInstruction(statementDetail.getDosagePatientInstruction()));
    String prescribingAgency = statementDetail.getPrescribingAgency();
    if (prescribingAgency != null && !prescribingAgency.trim().isEmpty()) {
        String prescribingAgencyDisplay = "";
        if (prescribingAgency.equalsIgnoreCase("prescribed-at-gp-practice")) {
            prescribingAgencyDisplay = "Prescribed at GP practice";
        } else if (prescribingAgency.equalsIgnoreCase("prescribed-by-another-organisation")) {
            prescribingAgencyDisplay = "Prescribed by another organisation";
        }
        Coding coding = new Coding(SystemURL.CS_CC_PRESCRIBING_AGENCY_STU3, prescribingAgency, prescribingAgencyDisplay);
        CodeableConcept codeableConcept = new CodeableConcept().addCoding(coding);
        medicationStatement.addExtension(new Extension(SystemURL.SD_EXTENSION_CC_PRESCRIBING_AGENCY, codeableConcept));
    }
    // #281 1.2.5 add dosageLastChanged
    Date dosageLastChanged = statementDetail.getDosageLastChanged();
    if (dosageLastChanged != null) {
        medicationStatement.addExtension(new Extension(SystemURL.SD_EXTENSION_CC_DOSAGE_LAST_CHANGED, new DateTimeType(dosageLastChanged)));
    }
    return medicationStatement;
}

Example 75 with DateTimeType

use of org.hl7.fhir.r5.model.DateTimeType in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method registerPatientResourceConverterToPatientDetail.

private PatientDetails registerPatientResourceConverterToPatientDetail(Patient patientResource) {
    PatientDetails patientDetails = new PatientDetails();
    HumanName name = patientResource.getNameFirstRep();
    String givenNames = name.getGiven().stream().map(n -> n.getValue()).collect(Collectors.joining(","));
    patientDetails.setForename(givenNames);
    patientDetails.setSurname(name.getFamily());
    patientDetails.setDateOfBirth(patientResource.getBirthDate());
    if (patientResource.getGender() != null) {
        patientDetails.setGender(patientResource.getGender().toString());
    }
    patientDetails.setNhsNumber(patientResource.getIdentifierFirstRep().getValue());
    DateTimeType deceased = (DateTimeType) patientResource.getDeceased();
    if (deceased != null) {
        try {
            patientDetails.setDeceased((deceased.getValue()));
        } catch (ClassCastException cce) {
            throwUnprocessableEntity422_InvalidResourceException("The multiple deceased property is expected to be a datetime");
        }
    }
    // activate patient as temporary
    patientDetails.setRegistrationStartDateTime(new Date());
    // patientDetails.setRegistrationEndDateTime(getRegistrationEndDate(patientResource));
    patientDetails.setRegistrationStatus(ACTIVE_REGISTRATION_STATUS);
    patientDetails.setRegistrationType(TEMPORARY_RESIDENT_REGISTRATION_TYPE);
    updateAddressAndTelecom(patientResource, patientDetails);
    // set some standard values for defaults, ensure managing org is always returned
    // added at 1.2.2 7 is A20047 the default GP Practice
    patientDetails.setManagingOrganization("7");
    return patientDetails;
}